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    Rpl10a ribosomal protein L10A [ Mus musculus (house mouse) ]

    Gene ID: 19896, updated on 5-Sep-2021

    Summary

    Official Symbol
    Rpl10aprovided by MGI
    Official Full Name
    ribosomal protein L10Aprovided by MGI
    Primary source
    MGI:MGI:1343877
    See related
    Ensembl:ENSMUSG00000037805
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CsA-; Nedd; Nedd6; CsA-19
    Expression
    Ubiquitous expression in ovary adult (RPKM 583.9), CNS E11.5 (RPKM 479.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Rpl10a in Genome Data Viewer
    Location:
    17; 17 A3.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (28547445..28550007)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (28328471..28331033)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (28465416..28467978)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene peroxisome proliferator activator receptor delta Neighboring gene RIKEN cDNA 1810013A23 gene Neighboring gene Fanconi anemia, complementation group E Neighboring gene TEA domain family member 3 Neighboring gene tubby like protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in maturation of LSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    part_of large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion HDA PubMed 
    located_in polysomal ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    60S ribosomal protein L10a
    Names
    NEDD-6
    neural precursor cell expressed developmentally down-regulated protein 6
    NP_001344557.1
    NP_035417.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357628.1NP_001344557.1  60S ribosomal protein L10a isoform 2

      Status: VALIDATED

      Source sequence(s)
      AA396580, CT025652
      Related
      ENSMUST00000150103.3
      Conserved Domains (1) summary
      cl00322
      Location:23133
      Ribosomal_L1; Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds ...
    2. NM_011287.2NP_035417.2  60S ribosomal protein L10a isoform 1

      See identical proteins and their annotated locations for NP_035417.2

      Status: VALIDATED

      Source sequence(s)
      AI835680, AK151172, BY574146
      Consensus CDS
      CCDS28576.1
      UniProtKB/TrEMBL
      Q5XJF6
      Related
      ENSMUSP00000048469.9, ENSMUST00000042334.16
      Conserved Domains (1) summary
      cl00322
      Location:2217
      Ribosomal_L1; Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      28547445..28550007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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