Format

Send to:

Choose Destination
    • Showing Current items.

    Pramel25 PRAME like 25 [ Mus musculus (house mouse) ]

    Gene ID: 194227, updated on 8-Jul-2021

    Summary

    Official Symbol
    Pramel25provided by MGI
    Official Full Name
    PRAME like 25provided by MGI
    Primary source
    MGI:MGI:3650478
    See related
    Ensembl:ENSMUSG00000066031
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm13023; BC084594; MGC:91194
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Pramel25 in Genome Data Viewer
    Location:
    4 E1; 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (143515904..143522155)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (143789334..143795585)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (143379237..143385488)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene PRAME like 23 Neighboring gene PRAME like 24 Neighboring gene PRAME like 26 Neighboring gene PRAME like 27

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC91194

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ubiquitin ligase-substrate adaptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    part_of Cul2-RING ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007077.2NP_001007078.2  oogenesin-like isoform 1

      See identical proteins and their annotated locations for NP_001007078.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK135972, BB285244, BC084594, CA559385, CF174133
      Consensus CDS
      CCDS18894.1
      UniProtKB/TrEMBL
      A2A8N2, Q3UX09, Q5XG66
      Related
      ENSMUSP00000082232.5, ENSMUST00000085144.11
    2. NM_001347246.1NP_001334175.1  oogenesin-like isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice junction compared to variant 1, that causes a frameshift. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AL626771
      Consensus CDS
      CCDS84818.1
      UniProtKB/TrEMBL
      A6PWA5
      Related
      ENSMUSP00000101396.2, ENSMUST00000105770.2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      143515904..143522155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center