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    Abhd16a abhydrolase domain containing 16A [ Mus musculus (house mouse) ]

    Gene ID: 193742, updated on 31-Jan-2019

    Summary

    Official Symbol
    Abhd16aprovided by MGI
    Official Full Name
    abhydrolase domain containing 16Aprovided by MGI
    Primary source
    MGI:MGI:99476
    See related
    Ensembl:ENSMUSG00000007036
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bat5; NG26; Bat-5; AI326074; D17H6S82E
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 54.1), adrenal adult (RPKM 49.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Abhd16a in Genome Data Viewer
    Location:
    17 B1; 17 18.59 cM
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (35089235..35102987)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (35226236..35239932)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 complex, locus G6D Neighboring gene lymphocyte antigen 6 complex, locus G6E Neighboring gene lymphocyte antigen 6 complex, locus G6F Neighboring gene lymphocyte antigen 6 complex, locus G5C Neighboring gene lymphocyte antigen 6 complex, locus G5B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC19234

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    acylglycerol lipase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acylglycerol lipase activity ISO
    Inferred from Sequence Orthology
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    monoacylglycerol catabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    monoacylglycerol catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    prostaglandin catabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    prostaglandin catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein ABHD16A
    Names
    HLA-B associated transcript 5
    abhydrolase domain-containing protein 16A
    alpha/beta hydrolase domain-containing protein 16A
    protein BAT5

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178592.3NP_848707.1  protein ABHD16A

      See identical proteins and their annotated locations for NP_848707.1

      Status: PROVISIONAL

      Source sequence(s)
      AC087117
      Consensus CDS
      CCDS28681.1
      UniProtKB/Swiss-Prot
      Q9Z1Q2
      Related
      ENSMUSP00000007251.7, ENSMUST00000007251.13
      Conserved Domains (1) summary
      pfam12695
      Location:302434
      Abhydrolase_5; Alpha/beta hydrolase family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      35089235..35102987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317351.1XP_017172840.1  protein ABHD16A isoform X1

    2. XM_017317352.1XP_017172841.1  protein ABHD16A isoform X2

    RNA

    1. XR_385303.3 RNA Sequence

    2. XR_001782059.1 RNA Sequence

      Related
      ENSMUST00000173846.7

    Reference GRCm38.p4 129X1/SvJ

    Genomic

    1. NT_039662.3 Reference GRCm38.p4 129X1/SvJ

      Range
      1338993..1352689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/MrkTac

    Genomic

    1. NT_187027.1 Reference GRCm38.p4 NOD/MrkTac

      Range
      1407473..1421169
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/ShiLtJ

    Genomic

    1. NT_187004.1 Reference GRCm38.p4 NOD/ShiLtJ

      Range
      1407710..1421406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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