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    Ptp4a2 protein tyrosine phosphatase 4a2 [ Mus musculus (house mouse) ]

    Gene ID: 19244, updated on 3-Apr-2024

    Summary

    Official Symbol
    Ptp4a2provided by MGI
    Official Full Name
    protein tyrosine phosphatase 4a2provided by MGI
    Primary source
    MGI:MGI:1277117
    See related
    Ensembl:ENSMUSG00000028788 AllianceGenome:MGI:1277117
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Prl-2
    Summary
    Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to be located in endosome and plasma membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in genitourinary system. Orthologous to human PTP4A2 (protein tyrosine phosphatase 4A2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in bladder adult (RPKM 35.0), CNS E11.5 (RPKM 30.5) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ptp4a2 in Genome Data Viewer
    Location:
    4 D2.2; 4 63.38 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (129704982..129743800)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (129811165..129850003)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene KH domain containing, RNA binding, signal transduction associated 1 Neighboring gene STARR-seq mESC enhancer starr_11505 Neighboring gene STARR-seq mESC enhancer starr_11507 Neighboring gene STARR-positive B cell enhancer mm9_chr4:129438194-129438495 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:129439040-129439227 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:129449340-129449541 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:129449548-129449839 Neighboring gene predicted gene 12967 Neighboring gene STARR-positive B cell enhancer ABC_E4671 Neighboring gene STARR-seq mESC enhancer starr_11508 Neighboring gene STARR-positive B cell enhancer ABC_E2715 Neighboring gene STARR-seq mESC enhancer starr_11510 Neighboring gene STARR-positive B cell enhancer ABC_E11257 Neighboring gene STARR-positive B cell enhancer ABC_E6225 Neighboring gene STARR-seq mESC enhancer starr_11511 Neighboring gene RIKEN cDNA 1700108I11 gene Neighboring gene STARR-positive B cell enhancer ABC_E7993 Neighboring gene STARR-positive B cell enhancer ABC_E6226 Neighboring gene predicted gene, 23845

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (2) 
    • Targeted (2)  1 citation
    • Endonuclease-mediated (3) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC102154, MGC103400

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphoprotein phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein tyrosine phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein tyrosine phosphatase type IVA 2
    Names
    protein-tyrosine phosphatase of regenerating liver 2
    NP_001158217.1
    NP_001411752.1
    NP_001411753.1
    NP_001411754.1
    NP_001411755.1
    NP_001411756.1
    NP_033000.1
    XP_017175534.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164745.2NP_001158217.1  protein tyrosine phosphatase type IVA 2 isoform 1

      See identical proteins and their annotated locations for NP_001158217.1

      Status: VALIDATED

      Source sequence(s)
      AL669834
      Consensus CDS
      CCDS18704.1
      UniProtKB/Swiss-Prot
      O70274, Q3U1K7
      UniProtKB/TrEMBL
      Q3UXF9
      Related
      ENSMUSP00000125901.2, ENSMUST00000165853.2
      Conserved Domains (1) summary
      cd18536
      Location:1155
      PTP-IVa2; protein tyrosine phosphatase type IVA 2
    2. NM_001424823.1NP_001411752.1  protein tyrosine phosphatase type IVA 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL669834
      UniProtKB/Swiss-Prot
      O70274, Q3U1K7
    3. NM_001424824.1NP_001411753.1  protein tyrosine phosphatase type IVA 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL669834
      UniProtKB/Swiss-Prot
      O70274, Q3U1K7
    4. NM_001424825.1NP_001411754.1  protein tyrosine phosphatase type IVA 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL669834
    5. NM_001424826.1NP_001411755.1  protein tyrosine phosphatase type IVA 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL669834
    6. NM_001424827.1NP_001411756.1  protein tyrosine phosphatase type IVA 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL669834
    7. NM_008974.5NP_033000.1  protein tyrosine phosphatase type IVA 2 isoform 1

      See identical proteins and their annotated locations for NP_033000.1

      Status: VALIDATED

      Source sequence(s)
      AL669834
      Consensus CDS
      CCDS18704.1
      UniProtKB/Swiss-Prot
      O70274, Q3U1K7
      UniProtKB/TrEMBL
      Q3UXF9
      Related
      ENSMUSP00000030578.8, ENSMUST00000030578.14
      Conserved Domains (1) summary
      cd18536
      Location:1155
      PTP-IVa2; protein tyrosine phosphatase type IVA 2

    RNA

    1. NR_188949.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL669834
    2. NR_188950.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL669834
    3. NR_188951.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL669834

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      129704982..129743800
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320045.3XP_017175534.1  protein tyrosine phosphatase type IVA 2 isoform X1

      UniProtKB/Swiss-Prot
      O70274, Q3U1K7
      UniProtKB/TrEMBL
      Q3UXF9
      Conserved Domains (1) summary
      cd18536
      Location:1155
      PTP-IVa2; protein tyrosine phosphatase type IVA 2