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    Bspry B-box and SPRY domain containing [ Mus musculus (house mouse) ]

    Gene ID: 192120, updated on 14-Feb-2019

    Summary

    Official Symbol
    Bspryprovided by MGI
    Official Full Name
    B-box and SPRY domain containingprovided by MGI
    Primary source
    MGI:MGI:2177191
    See related
    Ensembl:ENSMUSG00000028392
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in testis adult (RPKM 181.8), colon adult (RPKM 118.7) and 8 other tissues See more
    Orthologs

    Genomic context

    See Bspry in Genome Data Viewer
    Location:
    4; 4 B3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (62480004..62497300)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (62141101..62158332)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene ring finger protein 183 Neighboring gene predicted gene, 30589 Neighboring gene WD repeat domain 31 Neighboring gene haloacid dehalogenase-like hydrolase domain containing 3 Neighboring gene aminolevulinate, delta-, dehydratase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    vitamin D binding IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    calcium ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to leukemia inhibitory factor IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell leading edge ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    B box and SPRY domain-containing protein
    Names
    zetin 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368623.1NP_001355552.1  B box and SPRY domain-containing protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL732594
    2. NM_138653.1NP_619594.1  B box and SPRY domain-containing protein isoform 1

      See identical proteins and their annotated locations for NP_619594.1

      Status: VALIDATED

      Source sequence(s)
      AJ276690
      Consensus CDS
      CCDS18241.1
      UniProtKB/Swiss-Prot
      Q80YW5
      UniProtKB/TrEMBL
      B2RT02
      Related
      ENSMUSP00000030088.5, ENSMUST00000030088.11
      Conserved Domains (1) summary
      cl02614
      Location:282449
      SPRY; SPRY domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      62480004..62497300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006537676.3XP_006537739.2  B box and SPRY domain-containing protein isoform X1

      See identical proteins and their annotated locations for XP_006537739.2

      Conserved Domains (1) summary
      pfam00643
      Location:66105
      zf-B_box; B-box zinc finger
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