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    Pnn pinin [ Mus musculus (house mouse) ]

    Gene ID: 18949, updated on 23-Jun-2021

    Summary

    Official Symbol
    Pnnprovided by MGI
    Official Full Name
    pininprovided by MGI
    Primary source
    MGI:MGI:1100514
    See related
    Ensembl:ENSMUSG00000020994
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU045199; D12Ertd512; D12Ertd512e
    Expression
    Broad expression in CNS E11.5 (RPKM 65.0), CNS E14 (RPKM 38.8) and 20 other tissues See more
    Orthologs
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    Genomic context

    See Pnn in Genome Data Viewer
    Location:
    12 C1; 12 26.0 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (59113705..59120803)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (59066919..59074017)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (60167906..60175004)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 22973 Neighboring gene trafficking protein particle complex 6B Neighboring gene ribosomal protein S2 pseudogene Neighboring gene ribosomal protein L21, pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cell-cell adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in desmosome ISO
    Inferred from Sequence Orthology
    more info
     
    part_of exon-exon junction complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008891.2NP_032917.2  pinin

      See identical proteins and their annotated locations for NP_032917.2

      Status: VALIDATED

      Source sequence(s)
      AK030978, BY775218, CJ318297
      Consensus CDS
      CCDS25933.1
      UniProtKB/Swiss-Prot
      O35691
      UniProtKB/TrEMBL
      Q3TUQ5
      Related
      ENSMUSP00000021381.5, ENSMUST00000021381.6
      Conserved Domains (2) summary
      pfam04696
      Location:136261
      Pinin_SDK_memA; pinin/SDK/memA/ protein conserved region
      pfam04697
      Location:1130
      Pinin_SDK_N; pinin/SDK conserved region

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      59113705..59120803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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