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    Pigf phosphatidylinositol glycan anchor biosynthesis, class F [ Mus musculus (house mouse) ]

    Gene ID: 18701, updated on 5-Aug-2018

    Summary

    Official Symbol
    Pigfprovided by MGI
    Official Full Name
    phosphatidylinositol glycan anchor biosynthesis, class Fprovided by MGI
    Primary source
    MGI:MGI:99462
    See related
    Ensembl:ENSMUSG00000024145 Vega:OTTMUSG00000024353
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in testis adult (RPKM 37.0), bladder adult (RPKM 17.1) and 20 other tissues See more
    Orthologs

    Genomic context

    See Pigf in Genome Data Viewer
    Location:
    17 E4; 17 56.9 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (86997258..87025471, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (87396599..87424741, complement)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene transmembrane protein 247 Neighboring gene ATPase, H+ transporting, lysosomal V1 subunit E2 Neighboring gene ras homolog family member Q Neighboring gene cysteine-rich PDZ-binding protein Neighboring gene predicted gene, 30421

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    phosphotransferase activity, for other substituted phosphate groups TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    GPI anchor biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    phosphatidylinositol-glycan biosynthesis class F protein
    Names
    PIG-F
    phosphatidylinositol glycan, class F
    NP_032864.1
    XP_006523894.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008838.1NP_032864.1  phosphatidylinositol-glycan biosynthesis class F protein

      See identical proteins and their annotated locations for NP_032864.1

      Status: PROVISIONAL

      Source sequence(s)
      D50264
      Consensus CDS
      CCDS29011.1
      UniProtKB/Swiss-Prot
      O09101
      Related
      ENSMUSP00000024957.6, OTTMUSP00000029035, ENSMUST00000024957.6, OTTMUST00000059656
      Conserved Domains (1) summary
      pfam06699
      Location:21204
      PIG-F; GPI biosynthesis protein family Pig-F

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      86997258..87025471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006523831.2XP_006523894.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X1

      See identical proteins and their annotated locations for XP_006523894.1

      UniProtKB/Swiss-Prot
      O09101
      Conserved Domains (1) summary
      pfam06699
      Location:21204
      PIG-F; GPI biosynthesis protein family Pig-F
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