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    Omt2a oocyte maturation, alpha [ Mus musculus (house mouse) ]

    Gene ID: 18379, updated on 26-Sep-2022

    Summary

    Official Symbol
    Omt2aprovided by MGI
    Official Full Name
    oocyte maturation, alphaprovided by MGI
    Primary source
    MGI:MGI:106620
    See related
    Ensembl:ENSMUSG00000066463 AllianceGenome:MGI:106620
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    OM2a
    Summary
    Predicted to be located in cytosol. Is expressed in 2-cell stage embryo; oocyte; ovary; primary oocyte; and secondary oocyte. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Omt2a in Genome Data Viewer
    Location:
    9 E1; 9 43.65 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (78219254..78222079, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (78311972..78314797, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene developmental pluripotency associated 5C Neighboring gene glutathione S-transferase alpha 5 Neighboring gene oocyte maturation, beta Neighboring gene glutathione S-transferase, alpha 2 (Yc2)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111286.2NP_001104756.1  oocyte maturation, alpha isoform 1

      See identical proteins and their annotated locations for NP_001104756.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer protein (isoform 1).
      Source sequence(s)
      AU015702, DV648064, DV649105
      Consensus CDS
      CCDS52867.1
      UniProtKB/TrEMBL
      G5E8X8
      Related
      ENSMUSP00000126342.3, ENSMUST00000166056.9
    2. NM_001164523.1NP_001157995.1  oocyte maturation, alpha isoform 2

      See identical proteins and their annotated locations for NP_001157995.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses a different segment for its 5' UTR and 5' coding region, compared to variant 1. The resulting protein (isoform 2) has a shorter and distinct N-terminus when it is compared to isoform 1.
      Source sequence(s)
      AA619817, AA693017, AU015702, BB698495
      Consensus CDS
      CCDS52868.1
      UniProtKB/TrEMBL
      G3X9W2
      Related
      ENSMUSP00000109003.3, ENSMUST00000113376.10

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      78219254..78222079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)