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    Sebox SEBOX homeobox [ Mus musculus (house mouse) ]

    Gene ID: 18292, updated on 23-Jun-2021

    Summary

    Official Symbol
    Seboxprovided by MGI
    Official Full Name
    SEBOX homeoboxprovided by MGI
    Primary source
    MGI:MGI:108012
    See related
    Ensembl:ENSMUSG00000001103
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    OG; OG9; Og9x
    Expression
    Biased expression in cerebellum adult (RPKM 4.0), cortex adult (RPKM 0.9) and 3 other tissues See more
    Orthologs
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    Genomic context

    See Sebox in Genome Data Viewer
    Location:
    11 B5; 11 46.74 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (78394339..78395907)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (78503513..78505081)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (78317015..78318583)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 46, member 1 Neighboring gene sterile alpha and HEAT/Armadillo motif containing 1 Neighboring gene vitronectin Neighboring gene transmembrane protein 199 Neighboring gene polymerase (DNA-directed), delta interacting protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC106355

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    homeobox protein SEBOX
    Names
    OG9 homeobox
    homeobox OG-9
    skin-, embryo-, brain- and oocyte-specific homeobox

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008759.3NP_032785.1  homeobox protein SEBOX

      See identical proteins and their annotated locations for NP_032785.1

      Status: VALIDATED

      Source sequence(s)
      AL591177
      Consensus CDS
      CCDS25107.1
      UniProtKB/Swiss-Prot
      P70368
      Related
      ENSMUSP00000001130.7, ENSMUST00000001130.8
      Conserved Domains (1) summary
      pfam00046
      Location:2172
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      78394339..78395907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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