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    Oat ornithine aminotransferase [ Mus musculus (house mouse) ]

    Gene ID: 18242, updated on 12-Aug-2018

    Summary

    Official Symbol
    Oatprovided by MGI
    Official Full Name
    ornithine aminotransferaseprovided by MGI
    Primary source
    MGI:MGI:97394
    See related
    Ensembl:ENSMUSG00000030934 Vega:OTTMUSG00000060664
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    rhg; AI194874
    Expression
    Broad expression in liver adult (RPKM 563.9), large intestine adult (RPKM 200.8) and 16 other tissues See more
    Orthologs

    Genomic context

    See Oat in Genome Data Viewer
    Location:
    7 F3; 7 76.3 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (132557475..132576398, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (139749158..139768081, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene high mobility group box 1 pseudogene Neighboring gene predicted gene, 35249 Neighboring gene NK1 homeobox 2 Neighboring gene predicted gene, 46021

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    ornithine-oxo-acid transaminase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ornithine-oxo-acid transaminase activity ISO
    Inferred from Sequence Orthology
    more info
     
    pyridoxal phosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transaminase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    arginine catabolic process to glutamate IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    arginine catabolic process to proline via ornithine IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein hexamerization ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion HDA PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ornithine aminotransferase, mitochondrial
    Names
    ornithine--oxo-acid aminotransferase
    NP_058674.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016978.2NP_058674.1  ornithine aminotransferase, mitochondrial precursor

      See identical proteins and their annotated locations for NP_058674.1

      Status: VALIDATED

      Source sequence(s)
      AK145877, AK168851, BY435126
      Consensus CDS
      CCDS21923.1
      UniProtKB/Swiss-Prot
      P29758
      UniProtKB/TrEMBL
      Q3TG75, Q3UKT3
      Related
      ENSMUSP00000081544.6, OTTMUSP00000077131, ENSMUST00000084500.7, OTTMUST00000148348
      Conserved Domains (1) summary
      TIGR01885
      Location:40437
      Orn_aminotrans; ornithine aminotransferase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      132557475..132576398 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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