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    Mrpl40 mitochondrial ribosomal protein L40 [ Mus musculus (house mouse) ]

    Gene ID: 18100, updated on 23-Jun-2021

    Summary

    Official Symbol
    Mrpl40provided by MGI
    Official Full Name
    mitochondrial ribosomal protein L40provided by MGI
    Primary source
    MGI:MGI:1332635
    See related
    Ensembl:ENSMUSG00000022706
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nl; Nlvcf
    Expression
    Ubiquitous expression in placenta adult (RPKM 15.1), CNS E11.5 (RPKM 12.2) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Mrpl40 in Genome Data Viewer
    Location:
    16 A3; 16 11.69 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (18690767..18695875, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (18872018..18876637, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (18872111..18876730, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene cell division cycle 45 Neighboring gene RIKEN cDNA 2510002D24 gene Neighboring gene ubiquitin recognition factor in ER-associated degradation 1 Neighboring gene histone cell cycle regulator Neighboring gene 60S ribosomal protein L27a-like Neighboring gene U2 small nuclear ribonucleoprotein B pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in mitochondrial ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in mitochondrial ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    39S ribosomal protein L40, mitochondrial
    Names
    L40mt
    MRP-L40
    nuclear localization signal protein absent in velo-cardio-facial patients
    nuclear localization signal-containing protein deleted in velocardiofacial syndrome homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010922.2NP_035052.2  39S ribosomal protein L40, mitochondrial precursor

      See identical proteins and their annotated locations for NP_035052.2

      Status: VALIDATED

      Source sequence(s)
      AA240860, AK145885
      Consensus CDS
      CCDS28030.1
      UniProtKB/Swiss-Prot
      Q9Z2Q5
      UniProtKB/TrEMBL
      Q3UKS6
      Related
      ENSMUSP00000023391.9, ENSMUST00000023391.16
      Conserved Domains (1) summary
      pfam09812
      Location:45182
      MRP-L28; Mitochondrial ribosomal protein L28

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      18690767..18695875 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036159817.1XP_036015710.1  39S ribosomal protein L40, mitochondrial isoform X1

      Related
      ENSMUSP00000113065.2, ENSMUST00000119273.2
      Conserved Domains (1) summary
      pfam09812
      Location:1155
      MRP-L28; Mitochondrial ribosomal protein L28
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