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    Nipsnap1 nipsnap homolog 1 [ Mus musculus (house mouse) ]

    Gene ID: 18082, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nipsnap1provided by MGI
    Official Full Name
    nipsnap homolog 1provided by MGI
    Primary source
    MGI:MGI:1278344
    See related
    Ensembl:ENSMUSG00000034285
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in liver adult (RPKM 20.7), kidney adult (RPKM 12.3) and 22 other tissues See more
    Orthologs
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    Genomic context

    See Nipsnap1 in Genome Data Viewer
    Location:
    11; 11 A1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (4823951..4844201)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (4873951..4894201)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (4774006..4794203)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene neurofibromin 2 Neighboring gene peptidase M20 domain containing 2 pseudogene Neighboring gene microRNA 6918 Neighboring gene THO complex 5 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene predicted gene, 35321 Neighboring gene neurofilament, heavy polypeptide

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables neurotransmitter binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in sensory perception of pain IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within sensory perception of pain IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 

    General protein information

    Preferred Names
    protein NipSnap homolog 1
    Names
    4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008698.3NP_032724.1  protein NipSnap homolog 1

      See identical proteins and their annotated locations for NP_032724.1

      Status: VALIDATED

      Source sequence(s)
      AK013140, AK031804, BP771057, BY712531
      Consensus CDS
      CCDS24392.1
      UniProtKB/Swiss-Prot
      O55125
      UniProtKB/TrEMBL
      Q5SVF7
      Related
      ENSMUSP00000049338.3, ENSMUST00000038570.9
      Conserved Domains (1) summary
      pfam07978
      Location:185282
      NIPSNAP; NIPSNAP

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      4823951..4844201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006514575.5XP_006514638.1  protein NipSnap homolog 1 isoform X1

      Conserved Domains (1) summary
      pfam07978
      Location:188285
      NIPSNAP
    2. XM_006514577.3XP_006514640.1  protein NipSnap homolog 1 isoform X2

      See identical proteins and their annotated locations for XP_006514640.1

      Conserved Domains (1) summary
      pfam07978
      Location:61158
      NIPSNAP

    RNA

    1. XR_001779913.2 RNA Sequence

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