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    Ninj1 ninjurin 1 [ Mus musculus (house mouse) ]

    Gene ID: 18081, updated on 27-Jan-2018

    Summary

    Official Symbol
    Ninj1provided by MGI
    Official Full Name
    ninjurin 1provided by MGI
    Primary source
    MGI:MGI:1196617
    See related
    Ensembl:ENSMUSG00000037966 Vega:OTTMUSG00000027739
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU024536
    Expression
    Broad expression in liver adult (RPKM 287.9), kidney adult (RPKM 192.9) and 20 other tissues See more
    Orthologs

    Genomic context

    See Ninj1 in Genome Data Viewer
    Location:
    13; 13 A5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (49187547..49196251)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (49282916..49291620)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 40942 Neighboring gene predicted gene, 40943 Neighboring gene caspase recruitment domain family, member 19 Neighboring gene sushi domain containing 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    hyaloid vascular plexus regression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of cell-matrix adhesion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    tissue regeneration IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ninjurin-1
    Names
    nerve injury-induced protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013610.2NP_038638.1  ninjurin-1

      See identical proteins and their annotated locations for NP_038638.1

      Status: PROVISIONAL

      Source sequence(s)
      AC140284
      Consensus CDS
      CCDS26497.1
      UniProtKB/Swiss-Prot
      O70131
      UniProtKB/TrEMBL
      Q3TXT8
      Related
      ENSMUSP00000036740.8, OTTMUSP00000034751, ENSMUST00000049022.14, OTTMUST00000068647
      Conserved Domains (1) summary
      pfam04923
      Location:39139
      Ninjurin; Ninjurin

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      49187547..49196251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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