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    Ninj1 ninjurin 1 [ Mus musculus (house mouse) ]

    Gene ID: 18081, updated on 26-Jul-2021

    Summary

    Official Symbol
    Ninj1provided by MGI
    Official Full Name
    ninjurin 1provided by MGI
    Primary source
    MGI:MGI:1196617
    See related
    Ensembl:ENSMUSG00000037966
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU024536
    Expression
    Broad expression in liver adult (RPKM 287.9), kidney adult (RPKM 192.9) and 20 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ninj1 in Genome Data Viewer
    Location:
    13; 13 A5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (49341005..49349727)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (49187529..49196251)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (49282916..49291620)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40942 Neighboring gene predicted gene, 40943 Neighboring gene caspase recruitment domain family, member 19 Neighboring gene predicted gene, 52024 Neighboring gene sushi domain containing 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cell adhesion mediator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables cell adhesion mediator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables cell-cell adhesion mediator activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables lipopolysaccharide binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables lipopolysaccharide binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within angiogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within behavior IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in cell adhesion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cell adhesion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in cell adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in chemotaxis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cytolysis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cytolysis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in heterotypic cell-cell adhesion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within hyaloid vascular plexus regression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in inflammatory response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in inflammatory response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in leukocyte chemotaxis involved in inflammatory response IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in leukocyte chemotaxis involved in inflammatory response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in leukocyte chemotaxis involved in inflammatory response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in macrophage chemotaxis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in muscle cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in necrotic cell death IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in necrotic cell death ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in pericyte cell migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of angiogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of cell-matrix adhesion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of inflammatory response IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of inflammatory response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of osteoclast development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of toll-like receptor 4 signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in programmed cell death IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in programmed cell death ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein homooligomerization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein homooligomerization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of angiogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of monocyte chemotaxis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of monocyte chemotaxis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in tissue regeneration IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular region IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in extracellular region ISO
    Inferred from Sequence Orthology
    more info
     
    located_in filopodium membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
     
    located_in synaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    ninjurin-1
    Names
    nerve injury-induced protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013610.3NP_038638.1  ninjurin-1

      See identical proteins and their annotated locations for NP_038638.1

      Status: VALIDATED

      Source sequence(s)
      AK159111, BB756836
      Consensus CDS
      CCDS26497.1
      UniProtKB/Swiss-Prot
      O70131
      UniProtKB/TrEMBL
      Q3TXT8
      Related
      ENSMUSP00000036740.9, ENSMUST00000049022.15
      Conserved Domains (1) summary
      pfam04923
      Location:39139
      Ninjurin; Ninjurin

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      49341005..49349727
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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