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    Nfyc nuclear transcription factor-Y gamma [ Mus musculus (house mouse) ]

    Gene ID: 18046, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nfycprovided by MGI
    Official Full Name
    nuclear transcription factor-Y gammaprovided by MGI
    Primary source
    MGI:MGI:107901
    See related
    Ensembl:ENSMUSG00000032897
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in ovary adult (RPKM 46.0), thymus adult (RPKM 39.2) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Nfyc in Genome Data Viewer
    Location:
    4 D2.1; 4 56.52 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (120614632..120688776, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (120757435..120831579, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (120430040..120498320, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 Neighboring gene potassium voltage-gated channel, subfamily Q, member 4 Neighboring gene microRNA 30c-1 Neighboring gene microRNA 30e Neighboring gene microRNA 30f Neighboring gene regulating synaptic membrane exocytosis 3 Neighboring gene 60S ribosomal protein L26-like 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of CCAAT-binding factor complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of RNA polymerase II transcription regulator complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    part_of protein-DNA complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of transcription regulator complex IC
    Inferred by Curator
    more info
    PubMed 

    General protein information

    Preferred Names
    nuclear transcription factor Y subunit gamma
    Names
    CAAT box DNA-binding protein subunit C
    nuclear transcription factor Y subunit C

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001048168.2NP_001041633.1  nuclear transcription factor Y subunit gamma isoform 1

      See identical proteins and their annotated locations for NP_001041633.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 4, 5 and 6 encode the same isoform (1).
      Source sequence(s)
      AB006181, AK011327, BC053723, BE647422, DV650959
      Consensus CDS
      CCDS18594.1
      UniProtKB/Swiss-Prot
      P70353
      UniProtKB/TrEMBL
      Q7TPS7
      Related
      ENSMUSP00000112610.2, ENSMUST00000118902.8
      Conserved Domains (1) summary
      COG5208
      Location:17123
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    2. NM_001277095.1NP_001264024.1  nuclear transcription factor Y subunit gamma isoform 2

      See identical proteins and their annotated locations for NP_001264024.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AB006181, AK011327, AL606904, BE647422
      UniProtKB/Swiss-Prot
      P70353
      UniProtKB/TrEMBL
      Q3U114
      Conserved Domains (1) summary
      cl23735
      Location:4260
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
    3. NM_001357192.1NP_001344121.1  nuclear transcription factor Y subunit gamma isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 4, 5 and 6 encode the same isoform (1).
      Source sequence(s)
      AB006181, AK011327, AL606904, BE647422
      Consensus CDS
      CCDS18594.1
      Related
      ENSMUSP00000112810.2, ENSMUST00000120779.8
      Conserved Domains (1) summary
      COG5208
      Location:17123
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    4. NM_001357193.1NP_001344122.1  nuclear transcription factor Y subunit gamma isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 4, 5 and 6 encode the same isoform (1).
      Source sequence(s)
      AB006181, AK011327, AL606904, BE647422, BY005484
      Consensus CDS
      CCDS18594.1
      Conserved Domains (1) summary
      COG5208
      Location:17123
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    5. NM_001357194.1NP_001344123.1  nuclear transcription factor Y subunit gamma isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) differs in the 5' UTR, compared to variant 1. Variants 1, 2, 4, 5 and 6 encode the same isoform (1).
      Source sequence(s)
      AB006181, AK011327, AL606904, BE647422, BY005484
      Consensus CDS
      CCDS18594.1
      Conserved Domains (1) summary
      COG5208
      Location:17123
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    6. NM_008692.4NP_032718.2  nuclear transcription factor Y subunit gamma isoform 1

      See identical proteins and their annotated locations for NP_032718.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the llonger isoform (1). Variants 1, 2, 4, 5 and 6 encode the same isoform (1).
      Source sequence(s)
      AB006181, AK011327, AL606904, BE647422
      Consensus CDS
      CCDS18594.1
      UniProtKB/Swiss-Prot
      P70353
      Related
      ENSMUSP00000047441.6, ENSMUST00000043429.12
      Conserved Domains (1) summary
      COG5208
      Location:17123
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      120614632..120688776 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006502851.5XP_006502914.1  nuclear transcription factor Y subunit gamma isoform X4

      Conserved Domains (1) summary
      COG5208
      Location:2361
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    2. XM_006502849.5XP_006502912.1  nuclear transcription factor Y subunit gamma isoform X2

      Conserved Domains (1) summary
      COG5208
      Location:3699
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    3. XM_030253306.2XP_030109166.1  nuclear transcription factor Y subunit gamma isoform X3

      Conserved Domains (1) summary
      COG5208
      Location:1798
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    4. XM_036163816.1XP_036019709.1  nuclear transcription factor Y subunit gamma isoform X2

      Conserved Domains (1) summary
      COG5208
      Location:3699
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    5. XM_030253305.2XP_030109165.1  nuclear transcription factor Y subunit gamma isoform X1

      Conserved Domains (1) summary
      COG5208
      Location:17123
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    6. XM_030253307.1XP_030109167.1  nuclear transcription factor Y subunit gamma isoform X4

      Conserved Domains (1) summary
      COG5208
      Location:2361
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    7. XM_036163814.1XP_036019707.1  nuclear transcription factor Y subunit gamma isoform X1

      Related
      ENSMUSP00000095516.6, ENSMUST00000097906.12
      Conserved Domains (1) summary
      COG5208
      Location:17123
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    RNA

    1. XR_003954890.2 RNA Sequence

    2. XR_003954891.2 RNA Sequence

    3. XR_004941831.1 RNA Sequence

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