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    Nfatc2ip nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein [ Mus musculus (house mouse) ]

    Gene ID: 18020, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nfatc2ipprovided by MGI
    Official Full Name
    nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting proteinprovided by MGI
    Primary source
    MGI:MGI:1329015
    See related
    Ensembl:ENSMUSG00000030722
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NI; NIP45; D7Ertd304; D7Ertd304e
    Expression
    Ubiquitous expression in testis adult (RPKM 15.5), thymus adult (RPKM 7.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Nfatc2ip in Genome Data Viewer
    Location:
    7 F3; 7 69.01 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (125982025..125995966, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (126382853..126396796, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (133526368..133540251, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene microRNA 7058 Neighboring gene linker for activation of T cells Neighboring gene spinster homolog 1 Neighboring gene CD19 antigen Neighboring gene rabaptin, RAB GTPase binding effector protein 2 Neighboring gene ATPase, Ca++ transporting, cardiac muscle, fast twitch 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC130564

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IC
    Inferred by Curator
    more info
    PubMed 

    General protein information

    Preferred Names
    NFATC2-interacting protein
    Names
    45 kDa NF-AT-interacting protein
    45 kDa NFAT-interacting protein
    nuclear factor of activated T-cells, cytoplasmic 2-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010900.3NP_035030.2  NFATC2-interacting protein

      See identical proteins and their annotated locations for NP_035030.2

      Status: VALIDATED

      Source sequence(s)
      AK030107, U76759
      Consensus CDS
      CCDS21827.1
      UniProtKB/Swiss-Prot
      O09130
      Related
      ENSMUSP00000075094.5, ENSMUST00000075671.5
      Conserved Domains (2) summary
      smart00213
      Location:258327
      UBQ; Ubiquitin homologues
      cl00155
      Location:341410
      UBQ; Ubiquitin-like proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      125982025..125995966 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507430.5XP_006507493.1  NFATC2-interacting protein isoform X1

      Conserved Domains (1) summary
      cl28922
      Location:271326
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
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