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    Nap1l4 nucleosome assembly protein 1-like 4 [ Mus musculus (house mouse) ]

    Gene ID: 17955, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nap1l4provided by MGI
    Official Full Name
    nucleosome assembly protein 1-like 4provided by MGI
    Primary source
    MGI:MGI:1316687
    See related
    Ensembl:ENSMUSG00000059119
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    N; Nap2; D7Wsu30; AI316776; D7Wsu30e; 2810410H14Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 74.3), CNS E14 (RPKM 61.8) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Nap1l4 in Genome Data Viewer
    Location:
    7 F5; 7 88.24 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (143067316..143103698, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (143513579..143549882, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (150699484..150734995, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 (organic cation transporter), member 18 Neighboring gene pleckstrin homology like domain, family A, member 2 Neighboring gene predicted gene, 23297 Neighboring gene cysteinyl-tRNA synthetase Neighboring gene microRNA 7064 Neighboring gene predicted gene 15580

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables nucleosome binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in nucleosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in nucleosome assembly IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in nucleosome assembly ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    nucleosome assembly protein 1-like 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001285489.1NP_001272418.1  nucleosome assembly protein 1-like 4 isoform a

      See identical proteins and their annotated locations for NP_001272418.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (a). Variants 1 and 3 both encode the same isoform (a).
      Source sequence(s)
      AJ002198, BC089018, BY073069
      Consensus CDS
      CCDS85479.1
      UniProtKB/Swiss-Prot
      Q78ZA7
      UniProtKB/TrEMBL
      B7ZNL2
      Related
      ENSMUSP00000147130.2, ENSMUST00000208190.2
      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    2. NM_001285490.1NP_001272419.1  nucleosome assembly protein 1-like 4 isoform a

      See identical proteins and their annotated locations for NP_001272419.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1 and 3 both encode the same isoform (a).
      Source sequence(s)
      AC068006, AJ002198, BC089018
      Consensus CDS
      CCDS85479.1
      UniProtKB/Swiss-Prot
      Q78ZA7
      UniProtKB/TrEMBL
      B7ZNL2
      Related
      ENSMUSP00000146474.2, ENSMUST00000209098.2
      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    3. NM_008672.3NP_032698.1  nucleosome assembly protein 1-like 4 isoform b

      See identical proteins and their annotated locations for NP_032698.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate 3' coding exon compared to variant 1, that causes a frameshift. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a.
      Source sequence(s)
      AJ002198, BC089018, BQ746389, BY073069
      Consensus CDS
      CCDS40197.1
      UniProtKB/Swiss-Prot
      Q78ZA7
      UniProtKB/TrEMBL
      A2RSB1
      Related
      ENSMUSP00000072510.6, ENSMUST00000072727.7
      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      143067316..143103698 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508507.4XP_006508570.1  nucleosome assembly protein 1-like 4 isoform X6

      Conserved Domains (1) summary
      pfam00956
      Location:67293
      NAP; Nucleosome assembly protein (NAP)
    2. XM_030242206.2XP_030098066.1  nucleosome assembly protein 1-like 4 isoform X8

      Conserved Domains (1) summary
      pfam00956
      Location:67293
      NAP; Nucleosome assembly protein (NAP)
    3. XM_006508506.4XP_006508569.1  nucleosome assembly protein 1-like 4 isoform X5

      Conserved Domains (1) summary
      pfam00956
      Location:67303
      NAP; Nucleosome assembly protein (NAP)
    4. XM_030242205.2XP_030098065.1  nucleosome assembly protein 1-like 4 isoform X7

      Conserved Domains (1) summary
      pfam00956
      Location:67303
      NAP; Nucleosome assembly protein (NAP)
    5. XM_036152762.1XP_036008655.1  nucleosome assembly protein 1-like 4 isoform X2

      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    6. XM_036152764.1XP_036008657.1  nucleosome assembly protein 1-like 4 isoform X4

      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    7. XM_030242203.2XP_030098063.1  nucleosome assembly protein 1-like 4 isoform X6

      Conserved Domains (1) summary
      pfam00956
      Location:67293
      NAP; Nucleosome assembly protein (NAP)
    8. XM_036152759.1XP_036008652.1  nucleosome assembly protein 1-like 4 isoform X1

      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    9. XM_036152763.1XP_036008656.1  nucleosome assembly protein 1-like 4 isoform X3

      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    10. XM_030242200.2XP_030098060.1  nucleosome assembly protein 1-like 4 isoform X3

      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    11. XM_030242202.1XP_030098062.1  nucleosome assembly protein 1-like 4 isoform X3

      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    12. XM_030242204.1XP_030098064.1  nucleosome assembly protein 1-like 4 isoform X6

      Conserved Domains (1) summary
      pfam00956
      Location:67293
      NAP; Nucleosome assembly protein (NAP)
    13. XM_006508504.4XP_006508567.1  nucleosome assembly protein 1-like 4 isoform X1

      See identical proteins and their annotated locations for XP_006508567.1

      UniProtKB/TrEMBL
      B7ZNL2
      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    14. XM_006508505.5XP_006508568.1  nucleosome assembly protein 1-like 4 isoform X1

      See identical proteins and their annotated locations for XP_006508568.1

      UniProtKB/TrEMBL
      B7ZNL2
      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    15. XM_036152761.1XP_036008654.1  nucleosome assembly protein 1-like 4 isoform X1

      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
    16. XM_036152760.1XP_036008653.1  nucleosome assembly protein 1-like 4 isoform X1

      Conserved Domains (1) summary
      pfam00956
      Location:65338
      NAP; Nucleosome assembly protein (NAP)
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