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    Nap1l4 nucleosome assembly protein 1-like 4 [ Mus musculus (house mouse) ]

    Gene ID: 17955, updated on 5-Aug-2018

    Summary

    Official Symbol
    Nap1l4provided by MGI
    Official Full Name
    nucleosome assembly protein 1-like 4provided by MGI
    Primary source
    MGI:MGI:1316687
    See related
    Ensembl:ENSMUSG00000059119 Vega:OTTMUSG00000060029
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nap2; AI316776; D7Wsu30e; 2810410H14Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 74.3), CNS E14 (RPKM 61.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Nap1l4 in Genome Data Viewer
    Location:
    7 F5; 7 88.24 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (143513579..143549196, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (150699484..150734995, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 (organic cation transporter), member 18 Neighboring gene pleckstrin homology like domain, family A, member 2 Neighboring gene cysteinyl-tRNA synthetase Neighboring gene microRNA 7064 Neighboring gene predicted gene 15580

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    nucleosome binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    nucleosome assembly IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleosome assembly ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    nucleosome assembly protein 1-like 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001285489.1NP_001272418.1  nucleosome assembly protein 1-like 4 isoform a

      See identical proteins and their annotated locations for NP_001272418.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (a). Variants 1 and 3 both encode the same isoform (a).
      Source sequence(s)
      AJ002198, BC089018, BY073069
      Consensus CDS
      CCDS85479.1
      UniProtKB/Swiss-Prot
      Q78ZA7
      UniProtKB/TrEMBL
      B7ZNL2
      Related
      ENSMUSP00000147130.1, OTTMUSP00000076449, ENSMUST00000208190.1, OTTMUST00000146952
      Conserved Domains (1) summary
      pfam00956
      Location:65337
      NAP; Nucleosome assembly protein (NAP)
    2. NM_001285490.1NP_001272419.1  nucleosome assembly protein 1-like 4 isoform a

      See identical proteins and their annotated locations for NP_001272419.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1 and 3 both encode the same isoform (a).
      Source sequence(s)
      AC068006, AJ002198, BC089018
      Consensus CDS
      CCDS85479.1
      UniProtKB/Swiss-Prot
      Q78ZA7
      UniProtKB/TrEMBL
      B7ZNL2
      Related
      ENSMUSP00000146474.1, OTTMUSP00000076450, ENSMUST00000209098.1, OTTMUST00000146953
      Conserved Domains (1) summary
      pfam00956
      Location:65337
      NAP; Nucleosome assembly protein (NAP)
    3. NM_008672.3NP_032698.1  nucleosome assembly protein 1-like 4 isoform b

      See identical proteins and their annotated locations for NP_032698.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate 3' coding exon compared to variant 1, that causes a frameshift. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a.
      Source sequence(s)
      AJ002198, BC089018, BQ746389, BY073069
      Consensus CDS
      CCDS40197.1
      UniProtKB/Swiss-Prot
      Q78ZA7
      UniProtKB/TrEMBL
      A2RSB1
      Related
      ENSMUSP00000072510.5, OTTMUSP00000076448, ENSMUST00000072727.6, OTTMUST00000146951
      Conserved Domains (1) summary
      pfam00956
      Location:65337
      NAP; Nucleosome assembly protein (NAP)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      143513579..143549196 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508507.2XP_006508570.1  nucleosome assembly protein 1-like 4 isoform X3

      Conserved Domains (1) summary
      pfam00956
      Location:65293
      NAP; Nucleosome assembly protein (NAP)
    2. XM_006508506.2XP_006508569.1  nucleosome assembly protein 1-like 4 isoform X2

      Conserved Domains (1) summary
      pfam00956
      Location:65303
      NAP; Nucleosome assembly protein (NAP)
    3. XM_006508508.3XP_006508571.1  nucleosome assembly protein 1-like 4 isoform X1

      See identical proteins and their annotated locations for XP_006508571.1

      UniProtKB/TrEMBL
      B7ZNL2
      Conserved Domains (1) summary
      pfam00956
      Location:65337
      NAP; Nucleosome assembly protein (NAP)
    4. XM_006508504.3XP_006508567.1  nucleosome assembly protein 1-like 4 isoform X1

      See identical proteins and their annotated locations for XP_006508567.1

      UniProtKB/TrEMBL
      B7ZNL2
      Conserved Domains (1) summary
      pfam00956
      Location:65337
      NAP; Nucleosome assembly protein (NAP)
    5. XM_006508505.3XP_006508568.1  nucleosome assembly protein 1-like 4 isoform X1

      See identical proteins and their annotated locations for XP_006508568.1

      UniProtKB/TrEMBL
      B7ZNL2
      Conserved Domains (1) summary
      pfam00956
      Location:65337
      NAP; Nucleosome assembly protein (NAP)
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