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    sbds-1 Ribosome maturation protein SBDS [ Caenorhabditis elegans ]

    Gene ID: 175218, updated on 19-Aug-2018

    Summary

    Gene symbol
    sbds-1
    Gene description
    Ribosome maturation protein SBDS
    Primary source
    WormBase:WBGene00021063
    Locus tag
    CELE_W06E11.4
    Gene type
    protein coding
    RNA name
    Ribosome maturation protein SBDS
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

    Genomic context

    See sbds-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003281.10 (636713..638409, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Protein phosphatase fem-2 Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Ribosome biogenesis in eukaryotes, organism-specific biosystem (from KEGG)
      Ribosome biogenesis in eukaryotes, organism-specific biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...
    • Ribosome biogenesis in eukaryotes, conserved biosystem (from KEGG)
      Ribosome biogenesis in eukaryotes, conserved biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...

    General gene information

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    mature ribosome assembly IEA
    Inferred from Electronic Annotation
    more info
     
    ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    spindle IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Ribosome maturation protein SBDS
    NP_497226.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      636713..638409 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064825.5NP_497226.2  Ribosome maturation protein SBDS [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497226.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q23202
      Conserved Domains (3) summary
      COG1500
      Location:11244
      Sdo1; Ribosome maturation protein Sdo1 [Translation, ribosomal structure and biogenesis]
      pfam01172
      Location:19100
      SBDS; Shwachman-Bodian-Diamond syndrome (SBDS) protein
      pfam09377
      Location:111227
      SBDS_C; SBDS protein C-terminal domain
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