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    Magoh mago homolog, exon junction complex core component [ Mus musculus (house mouse) ]

    Gene ID: 17149, updated on 5-Aug-2018

    Summary

    Official Symbol
    Magohprovided by MGI
    Official Full Name
    mago homolog, exon junction complex core componentprovided by MGI
    Primary source
    MGI:MGI:1330312
    See related
    Ensembl:ENSMUSG00000028609 Vega:OTTMUSG00000009191
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mos2; Mago-m
    Expression
    Broad expression in CNS E11.5 (RPKM 75.7), placenta adult (RPKM 62.8) and 27 other tissues See more
    Orthologs

    Genomic context

    See Magoh in Genome Data Viewer
    Location:
    4 C7; 4 50.18 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (107879755..107887424)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (107552418..107560003)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 3 Neighboring gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 2 Neighboring gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor Neighboring gene RIKEN cDNA 0610037L13 gene Neighboring gene carnitine palmitoyltransferase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    RNA splicing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    female gamete generation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear-transcribed mRNA catabolic process, nonsense-mediated decay ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of alternative mRNA splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    catalytic step 2 spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    exon-exon junction complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    exon-exon junction complex ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein mago nashi homolog
    Names
    mago-nashi homolog, proliferation-associated

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001282737.1NP_001269666.1  protein mago nashi homolog

      See identical proteins and their annotated locations for NP_001269666.1

      Status: VALIDATED

      Source sequence(s)
      AK011512, BY134232
      Consensus CDS
      CCDS18441.1
      UniProtKB/Swiss-Prot
      P61327
      Related
      ENSMUSP00000030348.5, OTTMUSP00000009528, ENSMUST00000030348.5, OTTMUST00000020785
      Conserved Domains (1) summary
      cd11295
      Location:4146
      Mago_nashi; Mago nashi proteins, integral members of the exon junction complex

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      107879755..107887424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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