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    Sumo2 small ubiquitin-like modifier 2 [ Mus musculus (house mouse) ]

    Gene ID: 170930, updated on 5-Aug-2018

    Summary

    Official Symbol
    Sumo2provided by MGI
    Official Full Name
    small ubiquitin-like modifier 2provided by MGI
    Primary source
    MGI:MGI:2158813
    See related
    Ensembl:ENSMUSG00000020738 Vega:OTTMUSG00000003474
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Smt3A; Smt3b; SUMO-2; Smt3h2
    Expression
    Broad expression in CNS E11.5 (RPKM 246.7), CNS E14 (RPKM 206.8) and 20 other tissues See more
    Orthologs

    Genomic context

    See Sumo2 in Genome Data Viewer
    Location:
    11; 11 E2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (115523109..115536230, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (115384423..115397544, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein L39 pseudogene Neighboring gene 5',3'-nucleotidase, cytosolic Neighboring gene Jupiter microtubule associated homolog 1 Neighboring gene nucleoporin 85 Neighboring gene golgi associated, gamma adaptin ear containing, ARF binding protein 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    SUMO transferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein tag IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    retinoid X receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    transcription corepressor binding ISO
    Inferred from Sequence Orthology
    more info
     
    ubiquitin protein ligase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cellular protein localization ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of transcription, DNA-templated ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of proteasomal ubiquitin-dependent protein catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of protein sumoylation ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription by RNA polymerase II IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    protein sumoylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein sumoylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein sumoylation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    PML body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    small ubiquitin-related modifier 2
    Names
    SMT3 homolog 2
    SMT3 suppressor of mif two 3 homolog 2
    SMT3 supressor of mif two 3 homolog 2
    sentrin-2
    ubiquitin-like protein SMT3A
    ubiquitin-like protein SMT3B

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133354.2NP_579932.1  small ubiquitin-related modifier 2 precursor

      See identical proteins and their annotated locations for NP_579932.1

      Status: PROVISIONAL

      Source sequence(s)
      AK012619
      Consensus CDS
      CCDS36374.1
      UniProtKB/Swiss-Prot
      P61957
      Related
      ENSMUSP00000115044.1, OTTMUSP00000003569, ENSMUST00000153892.1, OTTMUST00000007409
      Conserved Domains (1) summary
      cd01763
      Location:793
      Sumo; Small ubiquitin-related modifier (SUMO)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      115523109..115536230 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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