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    Atp13a1 ATPase type 13A1 [ Mus musculus (house mouse) ]

    Gene ID: 170759, updated on 2-Mar-2019

    Summary

    Official Symbol
    Atp13a1provided by MGI
    Official Full Name
    ATPase type 13A1provided by MGI
    Primary source
    MGI:MGI:2180801
    See related
    Ensembl:ENSMUSG00000031862
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    catp; Atp13a; Cgi152
    Expression
    Ubiquitous expression in thymus adult (RPKM 77.4), ovary adult (RPKM 67.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Atp13a1 in Genome Data Viewer
    Location:
    8; 8 B3.3
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (69791163..69807749)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (72315062..72331648)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 19893 Neighboring gene zinc finger protein 866 Neighboring gene predicted gene, 39189 Neighboring gene Gem-interacting protein Neighboring gene predicted gene, 33695 Neighboring gene lysophosphatidic acid receptor 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    ATPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cation transport IEA
    Inferred from Electronic Annotation
    more info
     
    cellular calcium ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    manganese-transporting ATPase 13A1
    Names
    cation-transporting ATPase 2
    probable cation-transporting ATPase 13A1
    NP_573487.2
    XP_006509627.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133224.2NP_573487.2  manganese-transporting ATPase 13A1

      See identical proteins and their annotated locations for NP_573487.2

      Status: VALIDATED

      Source sequence(s)
      AC157564, AK052057
      Consensus CDS
      CCDS22349.1
      UniProtKB/Swiss-Prot
      Q9EPE9
      Related
      ENSMUSP00000034326.6, ENSMUST00000034326.6
      Conserved Domains (5) summary
      COG4087
      Location:828881
      COG4087; Soluble P-type ATPase [General function prediction only]
      TIGR01657
      Location:821169
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
      pfam00122
      Location:295507
      E1-E2_ATPase; E1-E2 ATPase
      pfam12710
      Location:640762
      HAD; haloacid dehalogenase-like hydrolase
      pfam13246
      Location:581664
      Cation_ATPase; Cation transport ATPase (P-type)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      69791163..69807749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006509564.3XP_006509627.1  manganese-transporting ATPase 13A1 isoform X1

      Conserved Domains (5) summary
      COG4087
      Location:828881
      COG4087; Soluble P-type ATPase [General function prediction only]
      TIGR01657
      Location:821164
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
      pfam00122
      Location:295507
      E1-E2_ATPase; E1-E2 ATPase
      pfam12710
      Location:640870
      HAD; haloacid dehalogenase-like hydrolase
      pfam13246
      Location:581664
      Cation_ATPase; Cation transport ATPase (P-type)

    RNA

    1. XR_001778408.1 RNA Sequence

    2. XR_379035.3 RNA Sequence

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