Format

Send to:

Choose Destination
    • Showing Current items.

    Fam229a family with sequence similarity 229, member A [ Mus musculus (house mouse) ]

    Gene ID: 68233, updated on 27-Jan-2018

    Summary

    Official Symbol
    Fam229aprovided by MGI
    Official Full Name
    family with sequence similarity 229, member Aprovided by MGI
    Primary source
    MGI:MGI:1915483
    See related
    Ensembl:ENSMUSG00000078554 Vega:OTTMUSG00000009657
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700125D06Rik
    Expression
    Restricted expression toward testis adult (RPKM 328.9) See more
    Orthologs

    Genomic context

    See Fam229a in Genome Data Viewer
    Location:
    4; 4 D2.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (129491190..129491956)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (129168434..129169200)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene BSD domain containing 1 Neighboring gene testis-specific serine kinase 3 Neighboring gene MARCKS-like 1 Neighboring gene histone deacetylase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085491.2NP_001078960.1  protein FAM229A

      See identical proteins and their annotated locations for NP_001078960.1

      Status: VALIDATED

      Source sequence(s)
      AK018987, BY707048, CA465983
      Consensus CDS
      CCDS38885.1
      UniProtKB/Swiss-Prot
      B2KGE5
      Related
      ENSMUSP00000101658.2, OTTMUSP00000010168, ENSMUST00000106043.2, OTTMUST00000022279
      Conserved Domains (1) summary
      pfam14982
      Location:60123
      UPF0731; UPF0731 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      129491190..129491956
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/MrkTac

    Genomic

    1. NT_187023.1 Reference GRCm38.p4 NOD/MrkTac

      Range
      1093264..1094030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center