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    Clhc1 clathrin heavy chain linker domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 73324, updated on 12-Aug-2018

    Summary

    Official Symbol
    Clhc1provided by MGI
    Official Full Name
    clathrin heavy chain linker domain containing 1provided by MGI
    Primary source
    MGI:MGI:1920574
    See related
    Ensembl:ENSMUSG00000020461 Vega:OTTMUSG00000005332
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700034F02Rik
    Expression
    Biased expression in testis adult (RPKM 3.7) and placenta adult (RPKM 0.1) See more
    Orthologs

    Genomic context

    See Clhc1 in Genome Data Viewer
    Location:
    11; 11 A3.3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (29547950..29578360)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (29447950..29478352)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene prolyl-tRNA synthetase domain containing 1 Neighboring gene mitochondrial translational initiation factor 2 Neighboring gene 60S ribosomal protein L7-like Neighboring gene ribosomal protein S27A Neighboring gene ribosomal protein S2 pseudogene Neighboring gene predicted gene 12092

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    clathrin heavy chain linker domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163521.1NP_001156993.1  clathrin heavy chain linker domain-containing protein 1 isoform 2

      See identical proteins and their annotated locations for NP_001156993.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site, compared to variant 1. The resulting isoform (2) lacks an internal 11-aa segment, compared to isoform 1.
      Source sequence(s)
      AK006591, BC144828, BX284634
      Consensus CDS
      CCDS83787.1
      UniProtKB/Swiss-Prot
      Q5M6W3
      UniProtKB/TrEMBL
      B7ZMV8
      Related
      ENSMUSP00000147007.1, OTTMUSP00000075367, ENSMUST00000208530.1, OTTMUST00000144649
      Conserved Domains (2) summary
      pfam13838
      Location:297354
      Clathrin_H_link; Clathrin-H-link
      pfam15739
      Location:30136
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
    2. NM_028504.1NP_082780.1  clathrin heavy chain linker domain-containing protein 1 isoform 1

      See identical proteins and their annotated locations for NP_082780.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer variant and encodes the longer isoform (1).
      Source sequence(s)
      AK006591, BX284634
      Consensus CDS
      CCDS48763.1
      UniProtKB/Swiss-Prot
      Q5M6W3
      Related
      ENSMUSP00000020753.3, OTTMUSP00000005508, ENSMUST00000020753.3, OTTMUST00000011891
      Conserved Domains (2) summary
      pfam13838
      Location:308365
      Clathrin_H_link; Clathrin-H-link
      pfam15739
      Location:30147
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      29547950..29578360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006514818.1XP_006514881.1  clathrin heavy chain linker domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006514881.1

      UniProtKB/Swiss-Prot
      Q5M6W3
      Conserved Domains (2) summary
      pfam13838
      Location:308365
      Clathrin_H_link; Clathrin-H-link
      pfam15739
      Location:30147
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
    2. XM_006514819.1XP_006514882.1  clathrin heavy chain linker domain-containing protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006514882.1

      UniProtKB/TrEMBL
      B7ZMV8
      Conserved Domains (2) summary
      pfam13838
      Location:297354
      Clathrin_H_link; Clathrin-H-link
      pfam15739
      Location:30136
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    RNA

    1. XR_001780065.1 RNA Sequence

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