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    1700024P04Rik RIKEN cDNA 1700024P04 gene [ Mus musculus (house mouse) ]

    Gene ID: 69382, updated on 23-May-2018

    Summary

    Official Symbol
    1700024P04Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700024P04 geneprovided by MGI
    Primary source
    MGI:MGI:1916632
    See related
    Ensembl:ENSMUSG00000045022 Vega:OTTMUSG00000033617
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    H2bl1; Subh2bv

    Genomic context

    See 1700024P04Rik in Genome Data Viewer
    Location:
    13; 13 D1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (98984090..98984565, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (99754045..99754520, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene transportin 1 Neighboring gene predicted gene 5453 Neighboring gene predicted gene, 35215 Neighboring gene predicted gene, 41035 Neighboring gene predicted gene, 35279

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    nucleosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    histone H2B subacrosomal variant
    Names
    histone H2B subacrosomal
    histone variant H2bl1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027064.1NP_081340.1  histone H2B subacrosomal variant

      See identical proteins and their annotated locations for NP_081340.1

      Status: PROVISIONAL

      Source sequence(s)
      AK006311
      Consensus CDS
      CCDS49342.1
      UniProtKB/Swiss-Prot
      Q9D9Z7
      Related
      ENSMUSP00000053046.5, OTTMUSP00000045684, ENSMUST00000054425.6, OTTMUST00000084704
      Conserved Domains (2) summary
      pfam00125
      Location:13100
      Histone; Core histone H2A/H2B/H3/H4
      cl23830
      Location:1120
      H2B; Histone H2B

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      98984090..98984565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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