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    Rps2 ribosomal protein S2 [ Mus musculus (house mouse) ]

    Gene ID: 16898, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rps2provided by MGI
    Official Full Name
    ribosomal protein S2provided by MGI
    Primary source
    MGI:MGI:105110
    See related
    Ensembl:ENSMUSG00000044533 Vega:OTTMUSG00000029228
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    S4; Llrep3
    Expression
    Ubiquitous expression in liver E14.5 (RPKM 886.9), liver E14 (RPKM 881.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rps2 in Genome Data Viewer
    Location:
    17; 17 A3.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (24720063..24721927)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (24857008..24858872)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene ring finger protein 151 Neighboring gene small nucleolar RNA, H/ACA box 7 Neighboring gene small nucleolar RNA host gene 9 Neighboring gene small nucleolar RNA, H/ACA box 64 Neighboring gene NADH:ubiquinone oxidoreductase subunit B10 Neighboring gene ribosomal protein L3-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC118037, MGC118038

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    fibroblast growth factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    mRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cellular response to interleukin-4 IDA
    Inferred from Direct Assay
    more info
    PubMed 
    formation of translation preinitiation complex ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of ubiquitin-protein transferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    ribosomal small subunit assembly ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    ribonucleoprotein complex ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
     
    synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    40S ribosomal protein S2
    Names
    40S ribosomal protein S4
    protein LLRep3
    repeat family 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008503.5NP_032529.2  40S ribosomal protein S2

      See identical proteins and their annotated locations for NP_032529.2

      Status: VALIDATED

      Source sequence(s)
      AC154566, AK166664, BY443672
      Consensus CDS
      CCDS37493.1
      UniProtKB/Swiss-Prot
      P25444
      UniProtKB/TrEMBL
      Q58EU3
      Related
      ENSMUSP00000131474.1, ENSMUST00000170715.7
      Conserved Domains (1) summary
      PTZ00070
      Location:54273
      PTZ00070; 40S ribosomal protein S2; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      24720063..24721927
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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