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    Gys1 glycogen synthase 1, muscle [ Mus musculus (house mouse) ]

    Gene ID: 14936, updated on 2-Oct-2018

    Summary

    Official Symbol
    Gys1provided by MGI
    Official Full Name
    glycogen synthase 1, muscleprovided by MGI
    Primary source
    MGI:MGI:101805
    See related
    Ensembl:ENSMUSG00000003865 Vega:OTTMUSG00000023845
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MGS; Gys3
    Expression
    Broad expression in mammary gland adult (RPKM 63.2), heart adult (RPKM 38.0) and 24 other tissues See more
    Orthologs

    Genomic context

    See Gys1 in Genome Data Viewer
    Location:
    7 B3; 7 29.31 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (45434839..45456617)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (52690209..52711987)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene neurotrophin 5 Neighboring gene luteinizing hormone beta Neighboring gene RuvB-like protein 2 Neighboring gene ferritin light polypeptide 1 Neighboring gene BCL2-associated X protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    glucose binding ISO
    Inferred from Sequence Orthology
    more info
     
    glycogen (starch) synthase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    glycogen (starch) synthase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    glycogen (starch) synthase activity ISO
    Inferred from Sequence Orthology
    more info
     
    glycogen synthase activity, transferring glucose-1-phosphate ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein kinase binding ISO
    Inferred from Sequence Orthology
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring glycosyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    glycogen biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    glycogen biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    glycogen biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    glycogen metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    heart development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    inclusion body IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    glycogen [starch] synthase, muscle
    Names
    glycogen synthase 3, brain
    NP_109603.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030678.3NP_109603.2  glycogen [starch] synthase, muscle

      See identical proteins and their annotated locations for NP_109603.2

      Status: VALIDATED

      Source sequence(s)
      AK169344, AK171426, BB853436
      Consensus CDS
      CCDS21244.1
      UniProtKB/Swiss-Prot
      Q9Z1E4
      Related
      ENSMUSP00000003964.8, OTTMUSP00000028190, ENSMUST00000003964.16, OTTMUST00000058241
      Conserved Domains (2) summary
      pfam05693
      Location:31663
      Glycogen_syn; Glycogen synthase
      pfam15151
      Location:645732
      RGCC; Response gene to complement 32 protein family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      45434839..45456617
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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