Format

Send to:

Choose Destination
    • Showing Current items.

    Cfap20 cilia and flagella associated protein 20 [ Mus musculus (house mouse) ]

    Gene ID: 14894, updated on 27-Jan-2018

    Summary

    Official Symbol
    Cfap20provided by MGI
    Official Full Name
    cilia and flagella associated protein 20provided by MGI
    Primary source
    MGI:MGI:107428
    See related
    Ensembl:ENSMUSG00000031796 Vega:OTTMUSG00000061744
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gtl3; T10-2A2; AL024127; 2600014O15Rik
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 41.9), testis adult (RPKM 40.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cfap20 in Genome Data Viewer
    Location:
    8; 8 C5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (95420249..95434869, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (97944149..97958769, complement)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 319 Neighboring gene U6 snRNA biogenesis 1 Neighboring gene matrix metallopeptidase 15 Neighboring gene casein kinase 2, alpha prime polypeptide Neighboring gene RIKEN cDNA 4933406B17 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of cell motility ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of feeding behavior ISO
    Inferred from Sequence Orthology
    more info
     
    protein polyglutamylation ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of cilium beat frequency involved in ciliary motility ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    centriole ISO
    Inferred from Sequence Orthology
    more info
     
    ciliary basal body ISO
    Inferred from Sequence Orthology
    more info
     
    cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cilium ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    microtubule IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cilia- and flagella-associated protein 20
    Names
    UPF0468 protein C16orf80 homolog
    gene trap locus 3 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008187.2NP_032213.2  cilia- and flagella-associated protein 20

      See identical proteins and their annotated locations for NP_032213.2

      Status: VALIDATED

      Source sequence(s)
      BC119023, BM934726, CB195345
      Consensus CDS
      CCDS40445.1
      UniProtKB/Swiss-Prot
      Q8BTU1
      Related
      ENSMUSP00000034249.6, OTTMUSP00000078137, ENSMUST00000034249.7, OTTMUST00000150680
      Conserved Domains (1) summary
      pfam05018
      Location:6185
      DUF667; Protein of unknown function (DUF667)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      95420249..95434869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center