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    Cfap20 cilia and flagella associated protein 20 [ Mus musculus (house mouse) ]

    Gene ID: 14894, updated on 23-Jun-2021

    Summary

    Official Symbol
    Cfap20provided by MGI
    Official Full Name
    cilia and flagella associated protein 20provided by MGI
    Primary source
    MGI:MGI:107428
    See related
    Ensembl:ENSMUSG00000031796
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gtl; Gtl3; T10-2A; T10-2A2; AL024127; 2600014O15Rik
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 41.9), testis adult (RPKM 40.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Cfap20 in Genome Data Viewer
    Location:
    8; 8 C5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (96146867..96161716, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (95420249..95434869, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (97944149..97958769, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 319 Neighboring gene U6 snRNA biogenesis 1 Neighboring gene matrix metallopeptidase 15 Neighboring gene VISTA enhancer mm71 Neighboring gene casein kinase 2, alpha prime polypeptide Neighboring gene RIKEN cDNA 4933406B17 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell motility IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in positive regulation of cell motility ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of feeding behavior ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein polyglutamylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cilium beat frequency involved in ciliary motility IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of cilium beat frequency involved in ciliary motility ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in centriole ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in ciliary basal body IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in ciliary basal body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cilium ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in motile cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cilia- and flagella-associated protein 20
    Names
    UPF0468 protein C16orf80 homolog
    gene trap locus 3 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008187.2NP_032213.2  cilia- and flagella-associated protein 20

      See identical proteins and their annotated locations for NP_032213.2

      Status: VALIDATED

      Source sequence(s)
      BC119023, BM934726, CB195345
      Consensus CDS
      CCDS40445.1
      UniProtKB/Swiss-Prot
      Q8BTU1
      Related
      ENSMUSP00000034249.7, ENSMUST00000034249.8
      Conserved Domains (1) summary
      pfam05018
      Location:1185
      DUF667; Protein of unknown function (DUF667)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      96146867..96161716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036153763.1XP_036009656.1  cilia- and flagella-associated protein 20 isoform X2

      Conserved Domains (1) summary
      pfam05018
      Location:1185
      DUF667; Protein of unknown function (DUF667)
    2. XM_036153762.1XP_036009655.1  cilia- and flagella-associated protein 20 isoform X1

      Conserved Domains (1) summary
      pfam05018
      Location:142272
      DUF667; Protein of unknown function (DUF667)
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