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    Pigq phosphatidylinositol glycan anchor biosynthesis, class Q [ Mus musculus (house mouse) ]

    Gene ID: 14755, updated on 9-Sep-2018

    Summary

    Official Symbol
    Pigqprovided by MGI
    Official Full Name
    phosphatidylinositol glycan anchor biosynthesis, class Qprovided by MGI
    Primary source
    MGI:MGI:1333114
    See related
    Ensembl:ENSMUSG00000025728 Vega:OTTMUSG00000033060
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gpi1; Gpih; Gpi1h; Gpi1p
    Expression
    Ubiquitous expression in liver E14.5 (RPKM 87.8), liver E14 (RPKM 63.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Pigq in Genome Data Viewer
    Location:
    17; 17 A3.3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (25926420..25942877, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (26063369..26078907, complement)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene WAP, FS, Ig, KU, and NTR-containing protein 1 Neighboring gene Rab40C, member RAS oncogene family Neighboring gene cytochrome c oxidase, subunit VIIc pseudogene Neighboring gene RIKEN cDNA A930017K11 gene Neighboring gene NHL repeat containing 4 Neighboring gene calpain 15 Neighboring gene RIKEN cDNA 1700022N22 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
    Names
    N-acetylglucosamyl transferase component GPI1
    PIG-Q
    phosphatidylinositol-glycan biosynthesis class Q protein
    NP_001277954.1
    NP_035952.2
    XP_006523727.1
    XP_006523729.1
    XP_017172745.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001291025.1NP_001277954.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit Q isoform 1

      See identical proteins and their annotated locations for NP_001277954.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
      Source sequence(s)
      AC159277
      Consensus CDS
      CCDS70774.1
      UniProtKB/TrEMBL
      Q3TD14
      Related
      ENSMUSP00000094981.3, OTTMUSP00000044251, ENSMUST00000097368.9, OTTMUST00000082548
      Conserved Domains (1) summary
      pfam05024
      Location:373523
      Gpi1; N-acetylglucosaminyl transferase component (Gpi1)
    2. NM_001357592.1NP_001344521.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit Q isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC159277
      Conserved Domains (1) summary
      pfam05024
      Location:315332
      Gpi1; N-acetylglucosaminyl transferase component (Gpi1)
    3. NM_011822.4NP_035952.2  phosphatidylinositol N-acetylglucosaminyltransferase subunit Q isoform 2

      See identical proteins and their annotated locations for NP_035952.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon in the coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1.
      Source sequence(s)
      AC159277
      Consensus CDS
      CCDS28538.1
      UniProtKB/Swiss-Prot
      Q9QYT7
      UniProtKB/TrEMBL
      Q3TF56
      Related
      ENSMUSP00000026823.8, OTTMUSP00000044250, ENSMUST00000026823.15, OTTMUST00000082547
      Conserved Domains (1) summary
      pfam05024
      Location:318463
      Gpi1; N-acetylglucosaminyl transferase component (Gpi1)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      25926420..25942877 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006523666.3XP_006523729.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit Q isoform X2

      Conserved Domains (1) summary
      pfam05024
      Location:315332
      Gpi1; N-acetylglucosaminyl transferase component (Gpi1)
    2. XM_017317256.1XP_017172745.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit Q isoform X1

      UniProtKB/TrEMBL
      Q3TD14
      Conserved Domains (1) summary
      pfam05024
      Location:373523
      Gpi1; N-acetylglucosaminyl transferase component (Gpi1)
    3. XM_006523664.3XP_006523727.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit Q isoform X1

      See identical proteins and their annotated locations for XP_006523727.1

      UniProtKB/TrEMBL
      Q3TD14
      Conserved Domains (1) summary
      pfam05024
      Location:373523
      Gpi1; N-acetylglucosaminyl transferase component (Gpi1)

    RNA

    1. XR_001782040.1 RNA Sequence

      Related
      ENSMUST00000148045.7
    2. XR_385283.3 RNA Sequence

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