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    Mrps33 mitochondrial ribosomal protein S33 [ Mus musculus (house mouse) ]

    Gene ID: 14548, updated on 23-Jun-2021

    Summary

    Official Symbol
    Mrps33provided by MGI
    Official Full Name
    mitochondrial ribosomal protein S33provided by MGI
    Primary source
    MGI:MGI:1338046
    See related
    Ensembl:ENSMUSG00000029918
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gda; MRP-; Gdap3; PTD00; CGI-13; PTD003; CGI-139; MRP-S33; AI841153
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 30.3), CNS E14 (RPKM 30.2) and 24 other tissues See more
    Orthologs
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    Try the new Transcript table

    Genomic context

    See Mrps33 in Genome Data Viewer
    Location:
    6 B1; 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (39778738..39787870, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (39801804..39810936, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (39751803..39760935, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene Braf transforming gene Neighboring gene predicted gene, 34389 Neighboring gene ferritin heavy chain, pseudogene 2 Neighboring gene predicted gene 7554 Neighboring gene aldolase A, fructose-bisphosphate pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Clone Names

    • MGC106490

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    28S ribosomal protein S33, mitochondrial
    Names
    S33mt
    ganglioside-induced differentiation-associated-protein 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001010930.1NP_001010930.1  28S ribosomal protein S33, mitochondrial isoform 2

      See identical proteins and their annotated locations for NP_001010930.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks a segment in the coding region, as compared to variant 1. The encoded isoform 2 has a shorter and distinct C-terminus.
      Source sequence(s)
      AI841153, BC028645, BU695761, BY296250
      Consensus CDS
      CCDS39464.1
      UniProtKB/TrEMBL
      Q8R2K5
      Related
      ENSMUSP00000110445.2, ENSMUST00000114797.2
      Conserved Domains (1) summary
      pfam08293
      Location:633
      MRP-S33; Mitochondrial ribosomal subunit S27
    2. NM_010270.2NP_034400.1  28S ribosomal protein S33, mitochondrial isoform 1

      See identical proteins and their annotated locations for NP_034400.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AI841153, AK019000, BU695761, BY296250
      Consensus CDS
      CCDS20026.1
      UniProtKB/Swiss-Prot
      Q9D2R8
      UniProtKB/TrEMBL
      Q58DZ5
      Related
      ENSMUSP00000031978.9, ENSMUST00000031978.9
      Conserved Domains (1) summary
      pfam08293
      Location:696
      MRP-S33; Mitochondrial ribosomal subunit S27

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      39778738..39787870 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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