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    Foxn2 forkhead box N2 [ Mus musculus (house mouse) ]

    Gene ID: 14236, updated on 7-Aug-2018

    Summary

    Official Symbol
    Foxn2provided by MGI
    Official Full Name
    forkhead box N2provided by MGI
    Primary source
    MGI:MGI:1347478
    See related
    Ensembl:ENSMUSG00000034998 Vega:OTTMUSG00000033848
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    HTLF; Fkh19; Foxn1; 3230402J05Rik; 6030465J18Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 4.0), cerebellum adult (RPKM 3.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Foxn2 in Genome Data Viewer
    Location:
    17; 17 E4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (88440712..88490533)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (88840052..88889873)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 31499 Neighboring gene predicted gene, 31615 Neighboring gene RIKEN cDNA 1700116H05 gene Neighboring gene predicted gene, 41651 Neighboring gene protein phosphatase 1, regulatory subunit 21 Neighboring gene ubiquitin-conjugating enzyme E2 S-like Neighboring gene stonin 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    skeletal muscle cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    forkhead box protein N2
    Names
    forkhead box N1
    forkhead homolog 19

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355742.1NP_001342671.1  forkhead box protein N2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC165091, AW495021
      Conserved Domains (1) summary
      pfam00250
      Location:112198
      Forkhead; Forkhead domain
    2. NM_001355743.1NP_001342672.1  forkhead box protein N2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC165091, AW495021
    3. NM_180974.5NP_851305.2  forkhead box protein N2 isoform 1

      See identical proteins and their annotated locations for NP_851305.2

      Status: VALIDATED

      Source sequence(s)
      AK086861, AK162076, AW495021, BB042729, BU152350, CB524750, CJ145725, CJ173433, CN698353, CO431378
      Consensus CDS
      CCDS29022.2
      UniProtKB/TrEMBL
      E9Q7L6
      Related
      ENSMUSP00000107857.2, OTTMUSP00000046067, ENSMUST00000112238.8
      Conserved Domains (1) summary
      pfam00250
      Location:112198
      Forkhead; Forkhead domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      88440712..88490533
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006523655.3XP_006523718.1  forkhead box protein N2 isoform X2

      Conserved Domains (1) summary
      pfam00250
      Location:112199
      Forkhead; Forkhead domain
    2. XM_006523651.3XP_006523714.1  forkhead box protein N2 isoform X1

      UniProtKB/TrEMBL
      E9Q7L6
      Conserved Domains (1) summary
      pfam00250
      Location:112198
      Forkhead; Forkhead domain
    3. XM_006523653.3XP_006523716.1  forkhead box protein N2 isoform X1

      See identical proteins and their annotated locations for XP_006523716.1

      UniProtKB/TrEMBL
      E9Q7L6
      Conserved Domains (1) summary
      pfam00250
      Location:112198
      Forkhead; Forkhead domain
    4. XM_006523654.3XP_006523717.1  forkhead box protein N2 isoform X1

      See identical proteins and their annotated locations for XP_006523717.1

      UniProtKB/TrEMBL
      E9Q7L6
      Conserved Domains (1) summary
      pfam00250
      Location:112198
      Forkhead; Forkhead domain
    5. XM_006523652.2XP_006523715.1  forkhead box protein N2 isoform X1

      See identical proteins and their annotated locations for XP_006523715.1

      UniProtKB/TrEMBL
      E9Q7L6
      Conserved Domains (1) summary
      pfam00250
      Location:112198
      Forkhead; Forkhead domain
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