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    Fau Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) [ Mus musculus (house mouse) ]

    Gene ID: 14109, updated on 9-Mar-2019

    Summary

    Official Symbol
    Fauprovided by MGI
    Official Full Name
    Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)provided by MGI
    Primary source
    MGI:MGI:102547
    See related
    Ensembl:ENSMUSG00000038274
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MNSFbeta
    Expression
    Ubiquitous expression in spleen adult (RPKM 573.2), ovary adult (RPKM 507.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Fau in Genome Data Viewer
    Location:
    19 A; 19 4.34 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (6057888..6059524)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (6057888..6059524)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene synovial apoptosis inhibitor 1, synoviolin Neighboring gene microRNA 6988 Neighboring gene mitochondrial ribosomal protein L49 Neighboring gene zinc finger, HIT domain containing 2 Neighboring gene transmembrane 7 superfamily member 2 Neighboring gene VPS51 GARP complex subunit

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    antibacterial humoral response ISO
    Inferred from Sequence Orthology
    more info
     
    antimicrobial humoral immune response mediated by antimicrobial peptide IDA
    Inferred from Direct Assay
    more info
    PubMed 
    antimicrobial humoral immune response mediated by antimicrobial peptide ISO
    Inferred from Sequence Orthology
    more info
     
    defense response to Gram-positive bacterium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    defense response to Gram-positive bacterium ISO
    Inferred from Sequence Orthology
    more info
     
    innate immune response in mucosa ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    40S ribosomal protein S30
    Names
    MNSF-beta
    monoclonal non-specific suppressor factor beta
    monoclonal nonspecific suppressor factor beta
    monoclonal nonspecific suppressor factor betamonoclonal nonspecific suppressor factor beta
    ubiquitin-like protein FUBI

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001160239.3NP_001153711.1  40S ribosomal protein S30

      See identical proteins and their annotated locations for NP_001153711.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 3. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AC131692
      Consensus CDS
      CCDS29489.1
      UniProtKB/Swiss-Prot
      P35545
      UniProtKB/TrEMBL
      Q642K5
      Related
      ENSMUSP00000136803.1, ENSMUST00000178310.7
      Conserved Domains (2) summary
      cd01793
      Location:174
      Fubi; Fubi ubiquitin-like protein
      pfam04758
      Location:75132
      Ribosomal_S30; Ribosomal protein S30
    2. NM_001190436.2NP_001177365.1  40S ribosomal protein S30

      See identical proteins and their annotated locations for NP_001177365.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AC131692
      Consensus CDS
      CCDS29489.1
      UniProtKB/Swiss-Prot
      P35545
      UniProtKB/TrEMBL
      Q642K5
      Related
      ENSMUSP00000136358.1, ENSMUST00000179142.1
      Conserved Domains (2) summary
      cd01793
      Location:174
      Fubi; Fubi ubiquitin-like protein
      pfam04758
      Location:75132
      Ribosomal_S30; Ribosomal protein S30
    3. NM_007990.4NP_032016.1  40S ribosomal protein S30

      See identical proteins and their annotated locations for NP_032016.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs in the 5' UTR, compared to variant 3. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AC131692
      Consensus CDS
      CCDS29489.1
      UniProtKB/Swiss-Prot
      P35545
      UniProtKB/TrEMBL
      Q642K5
      Related
      ENSMUSP00000042835.5, ENSMUST00000043074.12
      Conserved Domains (2) summary
      cd01793
      Location:174
      Fubi; Fubi ubiquitin-like protein
      pfam04758
      Location:75132
      Ribosomal_S30; Ribosomal protein S30

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      6057888..6059524
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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