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    Chchd2 coiled-coil-helix-coiled-coil-helix domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 14004, updated on 31-Jan-2019

    Summary

    Official Symbol
    Chchd2provided by MGI
    Official Full Name
    coiled-coil-helix-coiled-coil-helix domain containing 2provided by MGI
    Primary source
    MGI:MGI:1261428
    See related
    Ensembl:ENSMUSG00000070493
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Etohi6; AL033347
    Expression
    Ubiquitous expression in adrenal adult (RPKM 1404.4), duodenum adult (RPKM 1158.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Chchd2 in Genome Data Viewer
    Location:
    5; 5 G1.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (129881161..129887470, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (130357032..130363340, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene chaperonin containing Tcp1, subunit 6a (zeta) Neighboring gene small nucleolar RNA, H/ACA box 15 Neighboring gene sulfatase modifying factor 2 Neighboring gene phosphorylase kinase gamma 1 Neighboring gene zinc finger, BED type containing 5 Neighboring gene nuclear protein transcriptional regulator 1 like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC103085

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    mitochondrion organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of cellular response to hypoxia ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    mitochondrial intermembrane space ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion HDA PubMed 
    mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil-helix-coiled-coil-helix domain-containing protein 2
    Names
    coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial
    ethanol induced 6
    NP_077128.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024166.6NP_077128.2  coiled-coil-helix-coiled-coil-helix domain-containing protein 2 precursor

      See identical proteins and their annotated locations for NP_077128.2

      Status: PROVISIONAL

      Source sequence(s)
      AC164071, AC242408
      Consensus CDS
      CCDS19702.1
      UniProtKB/Swiss-Prot
      Q9D1L0
      Related
      ENSMUSP00000091835.3, ENSMUST00000094280.3
      Conserved Domains (1) summary
      pfam06747
      Location:116147
      CHCH; CHCH domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      129881161..129887470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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