Format

Send to:

Choose Destination
    • Showing Current items.

    Erh ERH mRNA splicing and mitosis factor [ Mus musculus (house mouse) ]

    Gene ID: 13877, updated on 31-Jan-2019

    Summary

    Official Symbol
    Erhprovided by MGI
    Official Full Name
    ERH mRNA splicing and mitosis factorprovided by MGI
    Primary source
    MGI:MGI:108089
    See related
    Ensembl:ENSMUSG00000021131
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mer; Prei1
    Expression
    Broad expression in CNS E11.5 (RPKM 151.7), CNS E14 (RPKM 121.7) and 23 other tissues See more
    Orthologs

    Genomic context

    See Erh in Genome Data Viewer
    Location:
    12; 12 C3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (80634023..80643871, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (81735010..81744848, complement)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 16 Neighboring gene predicted gene, 46364 Neighboring gene solute carrier family 39 (zinc transporter), member 9 Neighboring gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand Neighboring gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC103398, MGC130271, MGC130272

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    methyl-CpG binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    methylosome ISO
    Inferred from Sequence Orthology
    more info
     
    midbody ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    enhancer of rudimentary homolog
    Names
    preimplantation protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347409.1NP_001334338.1  enhancer of rudimentary homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate in-frame exon in the 5' coding region compared to variant 1. The encoded isoform (2) is longer and has a distinct N-terminus compared to isoform 1.
      Source sequence(s)
      AA260264, BU704106, BY085611, DV062839
      Consensus CDS
      CCDS83973.1
      UniProtKB/TrEMBL
      G3UW85
      Conserved Domains (1) summary
      pfam01133
      Location:22118
      ER; Enhancer of rudimentary
    2. NM_007951.4NP_031977.1  enhancer of rudimentary homolog isoform 1

      See identical proteins and their annotated locations for NP_031977.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript and encodes the shorter isoform (1).
      Source sequence(s)
      AA260264, BU704106, DV069684
      Consensus CDS
      CCDS36483.1
      UniProtKB/Swiss-Prot
      P84089
      UniProtKB/TrEMBL
      Q4FZH7
      Related
      ENSMUSP00000021559.7, ENSMUST00000021559.13
      Conserved Domains (1) summary
      pfam01133
      Location:399
      ER; Enhancer of rudimentary

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      80634023..80643871 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515469.3XP_006515532.1  enhancer of rudimentary homolog isoform X2

      Related
      ENSMUSP00000129620.1, ENSMUST00000166931.1
      Conserved Domains (1) summary
      pfam01133
      Location:22118
      ER; Enhancer of rudimentary
    2. XM_011243995.2XP_011242297.1  enhancer of rudimentary homolog isoform X1

      Conserved Domains (1) summary
      pfam01133
      Location:44140
      ER; Enhancer of rudimentary
    Support Center