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    Cdk2ap1 CDK2 (cyclin-dependent kinase 2)-associated protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 13445, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cdk2ap1provided by MGI
    Official Full Name
    CDK2 (cyclin-dependent kinase 2)-associated protein 1provided by MGI
    Primary source
    MGI:MGI:1202069
    See related
    Ensembl:ENSMUSG00000029394
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p12; Doc1; ST19; Apc10; DORC1; doc-1; Cdkap1
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 155.0), CNS E14 (RPKM 126.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cdk2ap1 in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (124345439..124354628, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (124795448..124804637, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer protein, membrane-associated 2 Neighboring gene phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 1 Neighboring gene M-phase phosphoprotein 9 Neighboring gene RIKEN cDNA 2810006K23 gene Neighboring gene strawberry notch 1 Neighboring gene lysine methyltransferase 5A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    • PluriNetWork, organism-specific biosystem (from WikiPathways)
      PluriNetWork, organism-specific biosystemThe aim of the PluriNetWork is to give an overview of specific mechanisms associated with pluripotency in mouse. Each node represents a gene and its corresponding protein product. As stated, we inten...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC102310, MGC117818

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA polymerase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    face morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    in utero embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of protein phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cyclin-dependent kinase 2-associated protein 1
    Names
    CDK2-associated protein 1
    deleted in oral cancer 1
    putative oral cancer suppressor

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013812.2NP_038840.2  cyclin-dependent kinase 2-associated protein 1

      See identical proteins and their annotated locations for NP_038840.2

      Status: VALIDATED

      Source sequence(s)
      AA190126, AK004852, BE623061
      Consensus CDS
      CCDS39279.1
      UniProtKB/Swiss-Prot
      O35207
      Related
      ENSMUSP00000031341.4, ENSMUST00000031341.10
      Conserved Domains (1) summary
      pfam09806
      Location:61113
      CDK2AP; Cyclin-dependent kinase 2-associated protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      124345439..124354628 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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