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    Crcp calcitonin gene-related peptide-receptor component protein [ Mus musculus (house mouse) ]

    Gene ID: 12909, updated on 31-Jan-2019

    Summary

    Official Symbol
    Crcpprovided by MGI
    Official Full Name
    calcitonin gene-related peptide-receptor component proteinprovided by MGI
    Primary source
    MGI:MGI:1100818
    See related
    Ensembl:ENSMUSG00000025532
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AL022669
    Expression
    Ubiquitous expression in testis adult (RPKM 19.8), CNS E18 (RPKM 14.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Crcp in Genome Data Viewer
    Location:
    5; 5 G1.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (130029306..130060787)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (130505176..130536657)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene argininosuccinate lyase Neighboring gene predicted gene, 40334 Neighboring gene protein-tyrosine sulfotransferase 1 Neighboring gene potassium channel tetramerisation domain containing 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA-directed 5'-3' RNA polymerase activity ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to RNA polymerase III activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    calcitonin gene-related peptide receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    DNA-templated transcription, initiation IEA
    Inferred from Electronic Annotation
    more info
     
    cellular metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    defense response to virus IEA
    Inferred from Electronic Annotation
    more info
     
    immune system process IEA
    Inferred from Electronic Annotation
    more info
     
    innate immune response IEA
    Inferred from Electronic Annotation
    more info
     
    neuropeptide signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription by RNA polymerase III ISO
    Inferred from Sequence Orthology
    more info
     
    transcription initiation from RNA polymerase III promoter IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    DNA polymerase III complex ISO
    Inferred from Sequence Orthology
    more info
     
    RNA polymerase III complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
     
    acrosomal vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    axon ISO
    Inferred from Sequence Orthology
    more info
     
    cell ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    DNA-directed RNA polymerase III subunit RPC9
    Names
    CGRP-RCP
    CGRP-receptor component protein
    CGRPRCP
    RNA polymerase III subunit C9

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007761.2NP_031787.1  DNA-directed RNA polymerase III subunit RPC9

      See identical proteins and their annotated locations for NP_031787.1

      Status: PROVISIONAL

      Source sequence(s)
      AC122339, AC161345
      Consensus CDS
      CCDS19706.1
      UniProtKB/Swiss-Prot
      O35427
      Related
      ENSMUSP00000026608.7, ENSMUST00000026608.10
      Conserved Domains (1) summary
      smart00657
      Location:1126
      RPOL4c; DNA-directed RNA-polymerase II subunit

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      130029306..130060787
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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