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    Coil coilin [ Mus musculus (house mouse) ]

    Gene ID: 12812, updated on 31-Jan-2019

    Summary

    Official Symbol
    Coilprovided by MGI
    Official Full Name
    coilinprovided by MGI
    Primary source
    MGI:MGI:104842
    See related
    Ensembl:ENSMUSG00000033983
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p80; Cln80; C79982; p80-coilin
    Expression
    Biased expression in testis adult (RPKM 31.9), CNS E11.5 (RPKM 10.6) and 14 other tissues See more
    Orthologs

    Genomic context

    See Coil in Genome Data Viewer
    Location:
    11 C; 11 54.34 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (88973935..88991613)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (88835249..88852927)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene elongin B-like Neighboring gene transcription elongation factor B (SIII), polypeptide 2 pseudogene Neighboring gene predicted gene 11496 Neighboring gene tripartite motif-containing 25

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC37472

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    disulfide oxidoreductase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein C-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    Cajal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Cajal body ISO
    Inferred from Sequence Orthology
    more info
     
    female germ cell nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coilin
    Names
    nuclear phosphoprotein of Cajal body

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016706.2NP_057915.2  coilin

      Status: VALIDATED

      Source sequence(s)
      AA240407, BM946023, BX630395, BY065340, BY108289, CF105200, CF948658, CF949734, CK792602
      Consensus CDS
      CCDS36277.1
      UniProtKB/TrEMBL
      E9Q284
      Related
      ENSMUSP00000047588.5, ENSMUST00000036649.7
      Conserved Domains (1) summary
      pfam15862
      Location:10141
      Coilin_N; Coilin N-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      88973935..88991613
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/ShiLtJ

    Genomic

    1. NT_187003.1 Reference GRCm38.p4 NOD/ShiLtJ

      Range
      2113927..2131546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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