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    Cnih1 cornichon family AMPA receptor auxiliary protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 12793, updated on 26-Sep-2022

    Summary

    Official Symbol
    Cnih1provided by MGI
    Official Full Name
    cornichon family AMPA receptor auxiliary protein 1provided by MGI
    Primary source
    MGI:MGI:1277202
    See related
    Ensembl:ENSMUSG00000015759 AllianceGenome:MGI:1277202
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cnih; CNIH-1; 0610007J15
    Summary
    Predicted to be involved in vesicle-mediated transport. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human CNIH1 (cornichon family AMPA receptor auxiliary protein 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 63.7), placenta adult (RPKM 36.7) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Cnih1 in Genome Data Viewer
    Location:
    14; 14 C1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (47013024..47025814, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (46775567..46788357, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA D330046F09 gene Neighboring gene cyclin-dependent kinase inhibitor 3 Neighboring gene glia maturation factor, beta Neighboring gene cell growth regulator with ring finger domain 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (2) 

    Pathways from PubChem

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein cornichon homolog 1
    Names
    cornichon homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355011.1NP_001341940.1  protein cornichon homolog 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC093043
      Consensus CDS
      CCDS88639.1
      UniProtKB/TrEMBL
      A0A6P7PWR3, D6RGU4
      Related
      ENSMUSP00000116885.3, ENSMUST00000146629.3
      Conserved Domains (1) summary
      pfam03311
      Location:7151
      Cornichon; Cornichon protein
    2. NM_009919.2NP_034049.2  protein cornichon homolog 1 isoform 1

      See identical proteins and their annotated locations for NP_034049.2

      Status: VALIDATED

      Source sequence(s)
      AK011200, AK152432, BY507194, DV653213
      Consensus CDS
      CCDS26980.1
      UniProtKB/Swiss-Prot
      O35372, Q6ZWW6
      UniProtKB/TrEMBL
      A0A6P5R007
      Related
      ENSMUSP00000015903.5, ENSMUST00000015903.12
      Conserved Domains (1) summary
      pfam03311
      Location:7135
      Cornichon; Cornichon protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      47013024..47025814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)