Format

Send to:

Choose Destination
    • Showing Current items.

    Cnih1 cornichon family AMPA receptor auxiliary protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 12793, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cnih1provided by MGI
    Official Full Name
    cornichon family AMPA receptor auxiliary protein 1provided by MGI
    Primary source
    MGI:MGI:1277202
    See related
    Ensembl:ENSMUSG00000015759
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cnih; CNIH-1; 0610007J15
    Expression
    Ubiquitous expression in adrenal adult (RPKM 63.7), placenta adult (RPKM 36.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cnih1 in Genome Data Viewer
    Location:
    14; 14 C1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (46775567..46788525, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (47395242..47408032, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA D330046F09 gene Neighboring gene cyclin-dependent kinase inhibitor 3 Neighboring gene glia maturation factor, beta Neighboring gene cell growth regulator with ring finger domain 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    cellular_component ND
    No biological Data available
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein cornichon homolog 1
    Names
    cornichon homolog 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355011.1NP_001341940.1  protein cornichon homolog 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC093043
      Conserved Domains (1) summary
      pfam03311
      Location:7151
      Cornichon; Cornichon protein
    2. NM_009919.2NP_034049.2  protein cornichon homolog 1 isoform 1

      See identical proteins and their annotated locations for NP_034049.2

      Status: VALIDATED

      Source sequence(s)
      AK011200, AK152432, BY507194, DV653213
      Consensus CDS
      CCDS26980.1
      UniProtKB/Swiss-Prot
      O35372
      Related
      ENSMUSP00000015903.4, ENSMUST00000015903.11
      Conserved Domains (1) summary
      pfam03311
      Location:7135
      Cornichon; Cornichon protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      46775567..46788525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006518505.1XP_006518568.1  protein cornichon homolog 1 isoform X1

    Support Center