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    Cdyl chromodomain protein, Y chromosome-like [ Mus musculus (house mouse) ]

    Gene ID: 12593, updated on 23-Jun-2021

    Summary

    Official Symbol
    Cdylprovided by MGI
    Official Full Name
    chromodomain protein, Y chromosome-likeprovided by MGI
    Primary source
    MGI:MGI:1339956
    See related
    Ensembl:ENSMUSG00000059288
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI325931
    Expression
    Biased expression in testis adult (RPKM 40.9), limb E14.5 (RPKM 5.9) and 13 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Cdyl in Genome Data Viewer
    Location:
    13 A3.3; 13 14.39 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (35843801..36058047)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (35659818..35874064)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (35751731..35965933)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700019C18 gene Neighboring gene predicted gene, 22674 Neighboring gene predicted gene, 22126 Neighboring gene ribonuclease P 40 subunit Neighboring gene protein phosphatase 1, regulatory subunit 3G Neighboring gene predicted gene, 30127

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (1)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables chromatin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables crotonyl-CoA hydratase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
     
    NOT enables methylated histone binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein-macromolecule adaptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables transcription corepressor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables transcription corepressor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    chromodomain Y-like protein
    Names
    CDY-like
    crotonyl-CoA hydratase
    putative histone acetyltransferase Cdyl
    NP_001116858.1
    NP_001365870.1
    NP_001365871.1
    NP_034011.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001123386.1NP_001116858.1  chromodomain Y-like protein isoform 2

      See identical proteins and their annotated locations for NP_001116858.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks several 5' exons but has an alternate 5' exon, as compared to variant 1. The resulting isoform (2) has a different and shorter N-terminus, as compared to isoform 1.
      Source sequence(s)
      AK028162, BC062123, BG229669
      Consensus CDS
      CCDS49236.1
      UniProtKB/Swiss-Prot
      Q9WTK2
      Related
      ENSMUSP00000131784.3, ENSMUST00000163595.3
      Conserved Domains (2) summary
      cd06558
      Location:290486
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
      cd18634
      Location:657
      CD_CDY; chromodomain of the Chromodomain Y-like protein family
    2. NM_001378941.1NP_001365870.1  chromodomain Y-like protein isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC141476, AC159209, AC162940
      Conserved Domains (2) summary
      cd06558
      Location:315511
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
      cd18634
      Location:3382
      CD_CDY; chromodomain of the Chromodomain Y-like protein family
    3. NM_001378942.1NP_001365871.1  chromodomain Y-like protein isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC159209, AC162940
      Conserved Domains (1) summary
      cd06558
      Location:55251
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
    4. NM_009881.3NP_034011.1  chromodomain Y-like protein isoform 1

      See identical proteins and their annotated locations for NP_034011.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK028162, BC055103, BG229669, BY090531
      Consensus CDS
      CCDS49235.1
      UniProtKB/Swiss-Prot
      Q9WTK2
      Related
      ENSMUSP00000074707.7, ENSMUST00000075220.14
      Conserved Domains (2) summary
      cd06558
      Location:339535
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
      smart00298
      Location:55109
      CHROMO; Chromatin organization modifier domain

    RNA

    1. NR_166191.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC159209, AC162940

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      35843801..36058047
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_382045.5 RNA Sequence

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