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    Cdr2 cerebellar degeneration-related 2 [ Mus musculus (house mouse) ]

    Gene ID: 12585, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cdr2provided by MGI
    Official Full Name
    cerebellar degeneration-related 2provided by MGI
    Primary source
    MGI:MGI:1100885
    See related
    Ensembl:ENSMUSG00000030878
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA617262
    Expression
    Broad expression in liver E14 (RPKM 62.2), liver E14.5 (RPKM 61.4) and 25 other tissues See more
    Orthologs

    Genomic context

    See Cdr2 in Genome Data Viewer
    Location:
    7 F2; 7 65.04 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (120957036..120982312, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (128100550..128125826, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene nuclear encoded tRNA leucine 4 (anticodon AAG) Neighboring gene polymerase (RNA) III (DNA directed) polypeptide E Neighboring gene major facilitator superfamily domain containing 13B Neighboring gene predicted pseudogene 9234

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC144810, MGC144811

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    cerebellar degeneration-related protein 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001354986.1NP_001341915.1  cerebellar degeneration-related protein 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC122248
    2. NM_007672.2NP_031698.2  cerebellar degeneration-related protein 2 isoform 1

      See identical proteins and their annotated locations for NP_031698.2

      Status: VALIDATED

      Source sequence(s)
      BC117530, BX637405, BY713743, CF616011, DT902919
      Consensus CDS
      CCDS21798.1
      UniProtKB/Swiss-Prot
      P97817
      Related
      ENSMUSP00000033169.8, ENSMUST00000033169.8
      Conserved Domains (1) summary
      TIGR02168
      Location:19262
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      120957036..120982312 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011241666.2XP_011239968.1  cerebellar degeneration-related protein 2 isoform X1

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