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    Commd3 COMM domain containing 3 [ Mus musculus (house mouse) ]

    Gene ID: 12238, updated on 6-Feb-2019

    Summary

    Official Symbol
    Commd3provided by MGI
    Official Full Name
    COMM domain containing 3provided by MGI
    Primary source
    MGI:MGI:88218
    See related
    Ensembl:ENSMUSG00000051154
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bup; AW550818; D2Ertd542e
    Expression
    Ubiquitous expression in adrenal adult (RPKM 46.7), CNS E14 (RPKM 37.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Commd3 in Genome Data Viewer
    Location:
    2 A3; 2 12.9 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (18672462..18676216)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (18594089..18597843)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit f, mitochondrial pseudogene Neighboring gene predicted gene, 33355 Neighboring gene Bmi1 polycomb ring finger oncogene Neighboring gene predicted gene, 46725

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    sodium ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    COMM domain-containing protein 3
    Names
    Bmi1 upstream
    bmi-1 upstream gene protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_147778.4NP_680087.1  COMM domain-containing protein 3

      See identical proteins and their annotated locations for NP_680087.1

      Status: VALIDATED

      Source sequence(s)
      AK041634, AK145999, BE950806
      Consensus CDS
      CCDS15710.1
      UniProtKB/Swiss-Prot
      Q63829
      Related
      ENSMUSP00000049882.4, ENSMUST00000061158.4
      Conserved Domains (1) summary
      cd04751
      Location:98194
      Commd3; COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      18672462..18676216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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