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    Bet1 Bet1 golgi vesicular membrane trafficking protein [ Mus musculus (house mouse) ]

    Gene ID: 12068, updated on 31-Jan-2019

    Summary

    Official Symbol
    Bet1provided by MGI
    Official Full Name
    Bet1 golgi vesicular membrane trafficking proteinprovided by MGI
    Primary source
    MGI:MGI:1343104
    See related
    Ensembl:ENSMUSG00000032757
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bet-1; AW555236
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 9.5), liver E18 (RPKM 9.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Bet1 in Genome Data Viewer
    Location:
    6; 6 A1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (4076904..4086998, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (4026904..4036927, complement)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930528H21 gene Neighboring gene predicted gene, 38760 Neighboring gene KH-type splicing regulatory protein pseudogene Neighboring gene predicted gene, 46948 Neighboring gene predicted gene, 33788

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    SNAP receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    syntaxin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    ER to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ER to Golgi vesicle-mediated transport ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    vesicle fusion with Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    vesicle fusion with Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    vesicle-mediated transport TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    Golgi cisterna ISO
    Inferred from Sequence Orthology
    more info
     
    Golgi membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Golgi trans cisterna IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    SNARE complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    SNARE complex ISO
    Inferred from Sequence Orthology
    more info
     
    cis-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    BET1 homolog
    Names
    blocked early in transport 1 homolog
    golgi vesicular membrane-trafficking protein p18

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009748.3NP_033878.1  BET1 homolog

      See identical proteins and their annotated locations for NP_033878.1

      Status: VALIDATED

      Source sequence(s)
      AC022235, AI429387, AK078796, AV003506, DV052674
      Consensus CDS
      CCDS19895.1
      UniProtKB/Swiss-Prot
      O35623
      Related
      ENSMUSP00000044877.4, ENSMUST00000049166.4
      Conserved Domains (1) summary
      cd15853
      Location:2987
      SNARE_Bet1; SNARE motif of Bet1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      4076904..4086998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504971.3XP_006505034.1  BET1 homolog isoform X1

      Conserved Domains (1) summary
      cl22856
      Location:2948
      SNARE; SNARE motif
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