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    Bcl7c B cell CLL/lymphoma 7C [ Mus musculus (house mouse) ]

    Gene ID: 12055, updated on 31-Jan-2019

    Summary

    Official Symbol
    Bcl7cprovided by MGI
    Official Full Name
    B cell CLL/lymphoma 7Cprovided by MGI
    Primary source
    MGI:MGI:1332237
    See related
    Ensembl:ENSMUSG00000030814
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C230096E12Rik
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 8.6), CNS E18 (RPKM 7.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Bcl7c in Genome Data Viewer
    Location:
    7; 7 F3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (127661454..127708944, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (134848492..134852280, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 629 Neighboring gene predicted gene, 39089 Neighboring gene predicted gene, 39090 Neighboring gene microRNA 762 Neighboring gene cardiotrophin 1 Neighboring gene cardiotrophin 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    B-cell CLL/lymphoma 7 protein family member C
    Names
    B-cell chronic lymphocytic leukemia/lymphoma 7C protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347652.1NP_001334581.1  B-cell CLL/lymphoma 7 protein family member C isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC124507
      Consensus CDS
      CCDS85422.1
      UniProtKB/TrEMBL
      A0A0U1RNX8
    2. NM_009746.2NP_033876.1  B-cell CLL/lymphoma 7 protein family member C isoform 2

      See identical proteins and their annotated locations for NP_033876.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      BC005673
      Consensus CDS
      CCDS21874.1
      UniProtKB/Swiss-Prot
      O08664
      Related
      ENSMUSP00000057937.8, ENSMUST00000061468.8
      Conserved Domains (2) summary
      PHA03249
      Location:93177
      PHA03249; DNA packaging tegument protein UL25; Provisional
      pfam04714
      Location:450
      BCL_N; BCL7, N-terminal conserver region

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      127661454..127708944 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507269.3XP_006507332.1  B-cell CLL/lymphoma 7 protein family member C isoform X1

      Related
      ENSMUSP00000145743.1, ENSMUST00000205977.1
      Conserved Domains (2) summary
      PHA03249
      Location:93181
      PHA03249; DNA packaging tegument protein UL25; Provisional
      pfam04714
      Location:450
      BCL_N; BCL7, N-terminal conserver region
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