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    Arl4a ADP-ribosylation factor-like 4A [ Mus musculus (house mouse) ]

    Gene ID: 11861, updated on 31-Jan-2019

    Summary

    Official Symbol
    Arl4aprovided by MGI
    Official Full Name
    ADP-ribosylation factor-like 4Aprovided by MGI
    Primary source
    MGI:MGI:99437
    See related
    Ensembl:ENSMUSG00000047446
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Arl4; AI467555
    Expression
    Broad expression in testis adult (RPKM 30.0), liver E14 (RPKM 10.1) and 16 other tissues See more
    Orthologs

    Genomic context

    See Arl4a in Genome Data Viewer
    Location:
    12 B1; 12 18.06 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (40033291..40037987, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (40759878..40764574, complement)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene PR domain containing 14 pseudogene Neighboring gene predicted gene, 40399 Neighboring gene ubiquitin specific peptidase 9, X chromosome pseudogene Neighboring gene ADP-ribosylation factor-like 4A, opposite strand Neighboring gene scinderin

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    GTP binding ISO
    Inferred from Sequence Orthology
    more info
     
    GTPase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    brown fat cell differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ADP-ribosylation factor-like protein 4A
    Names
    ADP-ribosylation factor-like 4
    ADP-ribosylation-like 4
    NP_001034604.1
    NP_031513.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039515.1NP_001034604.1  ADP-ribosylation factor-like protein 4A

      See identical proteins and their annotated locations for NP_001034604.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC131921, AK048606, CJ164717
      Consensus CDS
      CCDS25890.1
      UniProtKB/Swiss-Prot
      P61213
      Related
      ENSMUSP00000099013.3, ENSMUST00000101472.3
      Conserved Domains (1) summary
      cd04152
      Location:18200
      Arl4_Arl7; Arf-like 4 (Arl4) and 7 (Arl7) GTPases
    2. NM_007487.3NP_031513.1  ADP-ribosylation factor-like protein 4A

      See identical proteins and their annotated locations for NP_031513.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) and variant 2 encode the same protein.
      Source sequence(s)
      AC131921, AK048606
      Consensus CDS
      CCDS25890.1
      UniProtKB/Swiss-Prot
      P61213
      Related
      ENSMUSP00000114458.1, ENSMUST00000146905.1
      Conserved Domains (1) summary
      cd04152
      Location:18200
      Arl4_Arl7; Arf-like 4 (Arl4) and 7 (Arl7) GTPases

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      40033291..40037987 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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