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    Klf16 Kruppel-like factor 16 [ Mus musculus (house mouse) ]

    Gene ID: 118445, updated on 2-Oct-2018

    Summary

    Official Symbol
    Klf16provided by MGI
    Official Full Name
    Kruppel-like factor 16provided by MGI
    Primary source
    MGI:MGI:2153049
    See related
    Ensembl:ENSMUSG00000035397 Vega:OTTMUSG00000040152
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    DRRF; BTEB4; AI843742
    Expression
    Ubiquitous expression in ovary adult (RPKM 29.6), adrenal adult (RPKM 21.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Klf16 in Genome Data Viewer
    Location:
    10; 10 C1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (80567121..80577296, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (80029866..80040041, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene ATPase, class I, type 8B, member 3 Neighboring gene REX1, RNA exonuclease 1 Neighboring gene predicted gene, 31057 Neighboring gene predicted gene, 26710 Neighboring gene abhydrolase domain containing 17A Neighboring gene secretory carrier membrane protein 4 Neighboring gene adenosine deaminase, tRNA-specific 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA polymerase II proximal promoter sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    Krueppel-like factor 16
    Names
    BTE-binding protein 4
    basic transcription element-binding protein 4
    dopamine receptor regulating factor
    transcription factor BTEB4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_078477.2NP_510962.2  Krueppel-like factor 16

      See identical proteins and their annotated locations for NP_510962.2

      Status: VALIDATED

      Source sequence(s)
      AC152058, AK044577
      Consensus CDS
      CCDS24026.1
      UniProtKB/Swiss-Prot
      P58334
      UniProtKB/TrEMBL
      B2RPU7
      Related
      ENSMUSP00000048825.8, OTTMUSP00000058393, ENSMUST00000038558.8, OTTMUST00000104355
      Conserved Domains (3) summary
      COG5048
      Location:124186
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:128150
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:172197
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      80567121..80577296 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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