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    1110038F14Rik RIKEN cDNA 1110038F14 gene [ Mus musculus (house mouse) ]

    Gene ID: 117171, updated on 31-Jan-2019

    Summary

    Official Symbol
    1110038F14Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1110038F14 geneprovided by MGI
    Primary source
    MGI:MGI:2152337
    See related
    Ensembl:ENSMUSG00000063236
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 16.4), limb E14.5 (RPKM 13.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See 1110038F14Rik in Genome Data Viewer
    Location:
    15; 15 D3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (76948266..76950734)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (76778974..76781162)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 113 pseudogene Neighboring gene predicted gene, 46531 Neighboring gene predicted gene, 46534 Neighboring gene predicted gene, 35933 Neighboring gene myoglobin Neighboring gene apolipoprotein L 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UPF0488 protein C8orf33 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347540.1NP_001334469.1  UPF0488 protein C8orf33 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC157554, AK141496, AK153059
      Consensus CDS
      CCDS84175.1
      UniProtKB/Swiss-Prot
      Q3U6N9
    2. NM_054099.3NP_473440.1  UPF0488 protein C8orf33 homolog isoform 2

      See identical proteins and their annotated locations for NP_473440.1

      Status: VALIDATED

      Source sequence(s)
      AK141496, BC038324, BY090286
      UniProtKB/Swiss-Prot
      Q3U6N9
      Related
      ENSMUSP00000154907.1, ENSMUST00000230274.1
      Conserved Domains (1) summary
      pfam15393
      Location:40159
      DUF4615; Domain of unknown function (DUF4615)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      76948266..76950734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006520348.2XP_006520411.1  UPF0488 protein C8orf33 homolog isoform X1

      Related
      ENSMUSP00000071698.5, ENSMUST00000071792.6
      Conserved Domains (1) summary
      pfam15393
      Location:102221
      DUF4615; Domain of unknown function (DUF4615)
    2. XM_006520349.2XP_006520412.1  UPF0488 protein C8orf33 homolog isoform X2

      Conserved Domains (1) summary
      pfam15393
      Location:102129
      DUF4615; Domain of unknown function (DUF4615)
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