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    Rpl31 ribosomal protein L31 [ Mus musculus (house mouse) ]

    Gene ID: 114641, updated on 8-Jul-2021

    Summary

    Official Symbol
    Rpl31provided by MGI
    Official Full Name
    ribosomal protein L31provided by MGI
    Primary source
    MGI:MGI:2149632
    See related
    Ensembl:ENSMUSG00000073702
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dt; Dts
    Expression
    Broad expression in liver E14 (RPKM 213.5), bladder adult (RPKM 185.2) and 24 other tissues See more
    Orthologs
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    Genomic context

    See Rpl31 in Genome Data Viewer
    Location:
    1; 1 B
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (39406932..39410992)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (39367851..39371911)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (39424696..39428756)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene neuronal PAS domain protein 2 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene predicted gene, 53549 Neighboring gene TBC1 domain family, member 8 Neighboring gene predicted gene, 24826 Neighboring gene predicted gene, 53550 Neighboring gene CCR4-NOT transcription complex, subunit 11

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Spontaneous (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC106651, MGC107628

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in polysomal ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252218.1NP_001239147.1  60S ribosomal protein L31

      See identical proteins and their annotated locations for NP_001239147.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1-3 encode the same protein.
      Source sequence(s)
      AI607948, AK014295, BU571205, CB202955, CO805814
      Consensus CDS
      CCDS14904.1
      UniProtKB/Swiss-Prot
      P62900
      UniProtKB/TrEMBL
      Q5M9K9
      Related
      ENSMUSP00000137631.2, ENSMUST00000179954.8
      Conserved Domains (1) summary
      pfam01198
      Location:19100
      Ribosomal_L31e; Ribosomal protein L31e
    2. NM_001252219.1NP_001239148.1  60S ribosomal protein L31

      See identical proteins and their annotated locations for NP_001239148.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1-3 encode the same protein.
      Source sequence(s)
      AI607948, AK014295, BU571205, CO805814
      Consensus CDS
      CCDS14904.1
      UniProtKB/Swiss-Prot
      P62900
      UniProtKB/TrEMBL
      Q5M9K9
      Related
      ENSMUSP00000136354.2, ENSMUST00000178079.8
      Conserved Domains (1) summary
      pfam01198
      Location:19100
      Ribosomal_L31e; Ribosomal protein L31e
    3. NM_053257.3NP_444487.1  60S ribosomal protein L31

      See identical proteins and their annotated locations for NP_444487.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1-3 encode the same protein.
      Source sequence(s)
      AI607948, AK011236, CO805814
      Consensus CDS
      CCDS14904.1
      UniProtKB/Swiss-Prot
      P62900
      UniProtKB/TrEMBL
      Q5M9K9
      Related
      ENSMUSP00000083722.7, ENSMUST00000086535.12
      Conserved Domains (1) summary
      pfam01198
      Location:19100
      Ribosomal_L31e; Ribosomal protein L31e

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      39406932..39410992
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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