U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    pcmt protein-L-isoaspartate (D-aspartate) O-methyltransferase [ Oryzias melastigma (Indian medaka) ]

    Gene ID: 112158045, updated on 10-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    pcmt
    Gene description
    protein-L-isoaspartate (D-aspartate) O-methyltransferase
    See related
    EnsemblRapid:ENSOMEG00005017095
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias melastigma
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Also known as
    pcmt1
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See pcmt in Genome Data Viewer
    Location:
    chromosome: LG24
    Exon count:
    9
    Annotation release Status Assembly LG Location
    101 current ASM292280v2 (GCF_002922805.2) LG24 NC_050535.1 (18486113..18496516, complement)
    100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096095.1 (7246113..7256516)

    Linkage Group LG24 - NC_050535.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 7A2, mitochondrial Neighboring gene 5'-nucleotidase, ecto (CD73) Neighboring gene low density lipoprotein receptor-related protein 11 Neighboring gene nucleoporin 43 Neighboring gene large tumor suppressor kinase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-L-isoaspartate (D-aspartate) O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein-L-isoaspartate(D-aspartate) O-methyltransferase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM292280v2 Primary Assembly

    Genomic

    1. NC_050535.1 Reference ASM292280v2 Primary Assembly

      Range
      18486113..18496516 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024291217.1 → XP_024146985.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform X1

      UniProtKB/TrEMBL
      A0A3B3CSR2
      Related
      ENSOMEP00005039006.1, ENSOMET00005043425.1
      Conserved Domains (1) summary
      pfam01135
      Location:50 → 258
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

    2. XM_036210605.1 → XP_036066498.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform X2

      Related
      ENSOMEP00005039005.1, ENSOMET00005043424.1
      Conserved Domains (1) summary
      pfam01135
      Location:10 → 209
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

    RNA

    1. XR_002921259.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.