Format

Send to:

Choose Destination

1110004F10Rik RIKEN cDNA 1110004F10 gene [ Mus musculus (house mouse) ]

Gene ID: 56372, updated on 12-Aug-2019

Summary

Official Symbol
1110004F10Rikprovided by MGI
Official Full Name
RIKEN cDNA 1110004F10 geneprovided by MGI
Primary source
MGI:MGI:1929274
See related
Ensembl:ENSMUSG00000030663
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Smap; Smacp; sid2057; sid2057p
Expression
Ubiquitous expression in CNS E11.5 (RPKM 81.4), CNS E18 (RPKM 61.8) and 27 other tissues See more
Orthologs

Genomic context

See 1110004F10Rik in Genome Data Viewer
Location:
7; 7 F1
Exon count:
8
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (116081363..116105210)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (123236894..123248724)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 51455 Neighboring gene SRY (sex determining region Y)-box 6 Neighboring gene RIKEN cDNA 1700003G18 gene Neighboring gene SRY (sex determining region Y)-box 6, opposite strand Neighboring gene nucleoporin 35 pseudogene Neighboring gene pleckstrin homology domain containing, family A member 7 Neighboring gene predicted gene 44867 Neighboring gene small nucleolar RNA, C/D box 14A Neighboring gene ribosomal protein S13

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
small acidic protein
Names
sid 2057
small acidic protein sid2057p

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019772.2NP_062746.1  small acidic protein

    See identical proteins and their annotated locations for NP_062746.1

    Status: PROVISIONAL

    Source sequence(s)
    AC160535
    Consensus CDS
    CCDS21766.1
    UniProtKB/Swiss-Prot
    Q9R0P4
    Related
    ENSMUSP00000032899.5, ENSMUST00000032899.11
    Conserved Domains (1) summary
    pfam15477
    Location:27103
    SMAP; Small acidic protein family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p6 C57BL/6J

    Range
    116081363..116105210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242811.1XP_030098671.1  small acidic protein isoform X1

  2. XM_030242810.1XP_030098670.1  small acidic protein isoform X1

    Related
    ENSMUSP00000102219.1, ENSMUST00000106608.7
Support Center