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    Hdlbp high density lipoprotein (HDL) binding protein [ Mus musculus (house mouse) ]

    Gene ID: 110611, updated on 5-Aug-2018

    Summary

    Official Symbol
    Hdlbpprovided by MGI
    Official Full Name
    high density lipoprotein (HDL) binding proteinprovided by MGI
    Primary source
    MGI:MGI:99256
    See related
    Ensembl:ENSMUSG00000034088 Vega:OTTMUSG00000048654
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA960365; AI118566; D1Ertd101e; 1110005P14Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 70.8), limb E14.5 (RPKM 50.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Hdlbp in Genome Data Viewer
    Location:
    1 D; 1 47.24 cM
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (93405940..93478917, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (95302517..95375385, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 7 Neighboring gene microRNA 6345 Neighboring gene anoctamin 7 Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene septin 2 Neighboring gene FERM, RhoGEF and pleckstrin domain protein 2 Neighboring gene predicted gene, 41920

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cholesterol metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid transport IEA
    Inferred from Electronic Annotation
    more info
     
    steroid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    high-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    vigilin
    Names
    HDL-binding protein
    high density lipoprotein-binding protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001301364.1NP_001288293.1  vigilin

      See identical proteins and their annotated locations for NP_001288293.1

      Status: VALIDATED

      Source sequence(s)
      AC108412, AK132355, AK161663, BB854571, CK638858
      Consensus CDS
      CCDS15189.1
      UniProtKB/Swiss-Prot
      Q8VDJ3
      UniProtKB/TrEMBL
      Q3U4Z7, Q3V1M8
      Related
      ENSMUSP00000043047.7, OTTMUSP00000067769, ENSMUST00000042498.13, OTTMUST00000124601
      Conserved Domains (1) summary
      cd02394
      Location:655717
      vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    2. NM_001357556.1NP_001344485.1  vigilin

      Status: VALIDATED

      Source sequence(s)
      AC108412
      Conserved Domains (1) summary
      cd02394
      Location:655717
      vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    3. NM_133808.5NP_598569.1  vigilin

      See identical proteins and their annotated locations for NP_598569.1

      Status: VALIDATED

      Source sequence(s)
      AC108412
      Consensus CDS
      CCDS15189.1
      UniProtKB/Swiss-Prot
      Q8VDJ3
      UniProtKB/TrEMBL
      Q3U4Z7
      Related
      ENSMUSP00000127903.1, OTTMUSP00000067768, ENSMUST00000170883.7, OTTMUST00000124600
      Conserved Domains (1) summary
      cd02394
      Location:655717
      vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      93405940..93478917 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006529074.2XP_006529137.1  vigilin isoform X1

      UniProtKB/Swiss-Prot
      Q8VDJ3
      UniProtKB/TrEMBL
      Q3U4Z7
      Conserved Domains (1) summary
      cd02394
      Location:655717
      vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    2. XM_006529076.2XP_006529139.1  vigilin isoform X1

      See identical proteins and their annotated locations for XP_006529139.1

      UniProtKB/Swiss-Prot
      Q8VDJ3
      UniProtKB/TrEMBL
      Q3U4Z7
      Conserved Domains (1) summary
      cd02394
      Location:655717
      vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    3. XM_006529077.3XP_006529140.1  vigilin isoform X1

      See identical proteins and their annotated locations for XP_006529140.1

      UniProtKB/Swiss-Prot
      Q8VDJ3
      UniProtKB/TrEMBL
      Q3U4Z7
      Related
      ENSMUSP00000139671.1, OTTMUSP00000067770, ENSMUST00000186164.6, OTTMUST00000124602
      Conserved Domains (1) summary
      cd02394
      Location:655717
      vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
    4. XM_006529075.2XP_006529138.1  vigilin isoform X1

      See identical proteins and their annotated locations for XP_006529138.1

      UniProtKB/Swiss-Prot
      Q8VDJ3
      UniProtKB/TrEMBL
      Q3U4Z7
      Conserved Domains (1) summary
      cd02394
      Location:655717
      vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
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