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    Ints5 integrator complex subunit 5 [ Mus musculus (house mouse) ]

    Gene ID: 109077, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ints5provided by MGI
    Official Full Name
    integrator complex subunit 5provided by MGI
    Primary source
    MGI:MGI:1923578
    See related
    Ensembl:ENSMUSG00000071652
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA1698; 1110055N21Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 17.6), ovary adult (RPKM 16.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ints5 in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (8892987..8897890)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (8967477..8972380)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 5730408K05 gene Neighboring gene LBH domain containing 1 Neighboring gene RIKEN cDNA 1810009A15 gene Neighboring gene microRNA 5136 Neighboring gene alpha glucosidase 2 alpha neutral subunit Neighboring gene predicted gene, 36629 Neighboring gene beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    snRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integrator complex ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    integrator complex subunit 5
    Names
    int5

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_176843.3NP_789813.1  integrator complex subunit 5

      See identical proteins and their annotated locations for NP_789813.1

      Status: VALIDATED

      Source sequence(s)
      AC129217, AK168795, BY152900, BY546950
      Consensus CDS
      CCDS29556.1
      UniProtKB/Swiss-Prot
      Q8CHT3
      Related
      ENSMUSP00000093968.5, ENSMUST00000096249.5
      Conserved Domains (2) summary
      pfam14837
      Location:29251
      INTS5_N; Integrator complex subunit 5 N-terminus
      pfam14838
      Location:289998
      INTS5_C; Integrator complex subunit 5 C-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      8892987..8897890
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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