Format

Send to:

Choose Destination
    • Showing Current items.

    Nusap1 nucleolar and spindle associated protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 108907, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nusap1provided by MGI
    Official Full Name
    nucleolar and spindle associated protein 1provided by MGI
    Primary source
    MGI:MGI:2675669
    See related
    Ensembl:ENSMUSG00000027306
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    N; LNP; ANKT; SAPL; BM037; NuSAP; Q0310; AI481307; AW547774; BB165529; 2610201A12Rik
    Expression
    Biased expression in liver E14 (RPKM 34.2), liver E14.5 (RPKM 28.2) and 10 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Nusap1 in Genome Data Viewer
    Location:
    2; 2 E5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (119448779..119480646)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (119618298..119650165)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (119444034..119475896)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene calcineurin-like EF hand protein 1 Neighboring gene Opa interacting protein 5, opposite strand 1 Neighboring gene Opa interacting protein 5 Neighboring gene nuclear encoded rRNA 5S 204 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 1 Neighboring gene H3 histone, family 3C

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables microtubule binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in mitotic spindle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    nucleolar and spindle-associated protein 1
    Names
    nucleolar protein ANKT

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001042652.1NP_001036117.1  nucleolar and spindle-associated protein 1 isoform b

      See identical proteins and their annotated locations for NP_001036117.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame segment, compared to variant 1, resulting in a shorter protein (isoform b), compared to isoform a.
      Source sequence(s)
      AK042697, AK044819, CD544519
      Consensus CDS
      CCDS38206.1
      UniProtKB/Swiss-Prot
      Q9ERH4
      Related
      ENSMUSP00000028771.8, ENSMUST00000028771.8
      Conserved Domains (1) summary
      pfam16006
      Location:161388
      NUSAP; Nucleolar and spindle-associated protein
    2. NM_133851.3NP_598612.1  nucleolar and spindle-associated protein 1 isoform a

      See identical proteins and their annotated locations for NP_598612.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform a).
      Source sequence(s)
      AK044819, BC100392
      Consensus CDS
      CCDS16605.1
      UniProtKB/Swiss-Prot
      Q9ERH4
      Related
      ENSMUSP00000068713.9, ENSMUST00000068225.15
      Conserved Domains (1) summary
      pfam16006
      Location:170421
      NUSAP; Nucleolar and spindle-associated protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      119448779..119480646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030246564.2XP_030102424.1  nucleolar and spindle-associated protein 1 isoform X1

      Conserved Domains (1) summary
      pfam16006
      Location:40269
      NUSAP; Nucleolar and spindle-associated protein
    Support Center